General information for g14776.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14776 is located on chr_4: 2274660..2282596 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14776 | g14776.t8 | TSS | g14776.t8 | 2272211 | 2272211 |
| chr_4 | g14776 | g14776.t8 | isoform | g14776.t8 | 2273127 | 2275005 |
| chr_4 | g14776 | g14776.t8 | exon | g14776.t8.exon1 | 2273127 | 2273485 |
| chr_4 | g14776 | g14776.t8 | cds | g14776.t8.CDS1 | 2273359 | 2273485 |
| chr_4 | g14776 | g14776.t8 | exon | g14776.t8.exon2 | 2274574 | 2275005 |
| chr_4 | g14776 | g14776.t8 | cds | g14776.t8.CDS2 | 2274574 | 2274620 |
| chr_4 | g14776 | g14776.t8 | TTS | g14776.t8 | 2275004 | 2275004 |
Sequences
>g14776.t8 Gene=g14776 Length=791
AATTCTCTACAAATTAAAACTCGGTGAAATTGTCACAACCATTCCAACAATTGGTTTCAA
TGTCGAGACAGTAGAATACAAAAACATTTGTTTCACAGTGTGGGATGTTGGTGGTCAAGA
TAAAATTCGTCCACTTTGGCGTCATTATTTCCAAAACACTCAAGGTCTCATTTTTGTCGT
TGATTCAAATGATCGTGAGCGTGTTGTTGAAGCTGAAAGGGAACTTCATAATATGTTGAA
TGAAGATGAACTTCGTGATGCAGTGATTTTGGTATTTGCAAACAAACAAGATTTGCCAAA
TGCAATGAGCGCATCGGAATTGACTGAAAAATTAAGGTTGAATTCACTGCATAATAGAAT
GGTATATTCAGGCAACATGTGCAACACAAGGAAATGGTCTCTATGAAGGACTCGATTGGC
TGTCAAAGGAACTTGAAAAGAAATAAACAAAACAATAATCAAAAACACTAAAAATTACTT
TAAATTAAATTGAAATGAAGACAAGACCAGTCCATCACTACCTTTCCTAAATTTCTCTTT
TTCCTATTCTGCTCAATTAAAAAAATCCATTTTGTTATATGAAAAATTACCAACTGAAAT
AATTGAATGTTTTCATTTCAAAACTGGCATTTTTTTCTTCATTAAATTTGTAATATGCTA
AACATAGTAAAATATTTTTTTGTTTAAATTATGTTATCAAAATCAACATTTTCATGCATG
GCAATTTTTCTTCTTATTAATTAAATATGATTATCTGTAATAAATTAAAAATTGAATAAA
ATGTGTAAAAA
>g14776.t8 Gene=g14776 Length=57
MLNEDELRDAVILVFANKQDLPNAMSASELTEKLRLNSLHNRMVYSGNMCNTRKWSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14776.t8 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 57 | 0.0e+00 |
| 2 | g14776.t8 | PANTHER | PTHR11711 | ADP RIBOSYLATION FACTOR-RELATED | 1 | 52 | 0.0e+00 |
| 3 | g14776.t8 | PANTHER | PTHR11711:SF392 | ADP-RIBOSYLATION FACTOR 1 | 1 | 52 | 0.0e+00 |
| 1 | g14776.t8 | Pfam | PF00025 | ADP-ribosylation factor family | 1 | 51 | 0.0e+00 |
| 4 | g14776.t8 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 42 | 7.3e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
