General information for g14781.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein krueppel.
Parent gene
- The parent gene g14781 is located on chr_4: 2308724..2312846 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14781 | g14781.t1 | isoform | g14781.t1 | 2308724 | 2312846 |
| chr_4 | g14781 | g14781.t1 | exon | g14781.t1.exon1 | 2308724 | 2309268 |
| chr_4 | g14781 | g14781.t1 | cds | g14781.t1.CDS1 | 2308724 | 2309268 |
| chr_4 | g14781 | g14781.t1 | exon | g14781.t1.exon2 | 2309478 | 2309561 |
| chr_4 | g14781 | g14781.t1 | cds | g14781.t1.CDS2 | 2309478 | 2309561 |
| chr_4 | g14781 | g14781.t1 | exon | g14781.t1.exon3 | 2309624 | 2309708 |
| chr_4 | g14781 | g14781.t1 | cds | g14781.t1.CDS3 | 2309624 | 2309708 |
| chr_4 | g14781 | g14781.t1 | exon | g14781.t1.exon4 | 2310502 | 2310998 |
| chr_4 | g14781 | g14781.t1 | cds | g14781.t1.CDS4 | 2310502 | 2310998 |
| chr_4 | g14781 | g14781.t1 | exon | g14781.t1.exon5 | 2312807 | 2312846 |
| chr_4 | g14781 | g14781.t1 | cds | g14781.t1.CDS5 | 2312807 | 2312846 |
| chr_4 | g14781 | g14781.t1 | TSS | g14781.t1 | NA | NA |
| chr_4 | g14781 | g14781.t1 | TTS | g14781.t1 | NA | NA |
Sequences
>g14781.t1 Gene=g14781 Length=1251
ATGACATCACCAACTTTACAAGGAGCTGCATTACTTAAAGAAATGGAAGAACTTTCAAGG
AAGCGAAAATCAAAAGACGATTCATCACCATCACCACCACAACAAGGTGTTCCAAATTTG
GATATTTTCAATTGTTTTAACGTAACAAATCCATCACCATTGAACATGTTTTCACCACAA
TTTCTAGCAAATCAAACAGCAGCTGCTGTCGCTCTCATGGCATGGCCAATTCAACTACGT
GCTCAACTCGCATCAACCTTGCGTCTTCCAAATCATCCACTCATGAATTGGCCATCAACT
GACATTTCAAAGCTTAATAAAGTGTTCAAAAATCAAAATAGTGAAGCTCAAATTGTCTCA
ACTACGAGCGATTTACCAACACAGAAGAAAATTGCTAAAAGAAAGCAACAACCGGAAAAC
ATAAGAAAATTGGAGCCATTGAAAATTAGTGAAAAATTTGTACCGACTTTATTGTCACCT
ACTGAGAGTAATTCTGAAATTAGCACATGCTCGAGTAATTCTAAAGAAACTACCAAGCAA
GACAAAATCTTCACATGCCAAATTTGCAATCGTTCATTTGGATATAAGCATGTACTACAA
AATCATGAGCGAACTCATACTGGTGAAAAACCATTTGAATGCTCTGAATGTCATAAGCGA
TTCACTCGTGATCATCATTTGAAAACTCATATGCGCCTACATACCGGTGAAAAACCATAC
AGTTGCAGTCATTGTGATCGACAATTTGTACAAGTTGCAAATTTAAGGAGACATCTTCGA
GTGCACACGGGTGAGCGTCCATACAATTGTGACATTTGTGAGTCAAGATTTAGTGACAGC
AATCAATTAAAAGCTCACATCATGTCACATTCAAGTTCAGAAAAGCCATTTGAATGTGAA
AAATGCAATGTCAGGTTTAGAAAGCGTGAACATTTGATAAATCATAAATGTGGAAGTCCA
TTGAATGAAAATAGTGATGATTCAATAGAATTGGCAGCAACAAATATTAATTTAGTCAAT
GATGGACTTTTAAAACCACCATTGAAAAAATTTTGTAATTTTCCATCAGCATTTTTGGGT
TTGCCTTTGCAAATTCCAGAACAAACTGAACCTGAAGATTTAAGTATGCATACGCCACGA
TCAAATTTGTCAAATGATGATTTTGAAGAACTTGATGATGCTGCTGCAATGTATTTAAAG
CTTAAACAGAGACAATTGGAAAAAAGTGCAATCGAAGCTCTAACAAAGTGA
>g14781.t1 Gene=g14781 Length=416
MTSPTLQGAALLKEMEELSRKRKSKDDSSPSPPQQGVPNLDIFNCFNVTNPSPLNMFSPQ
FLANQTAAAVALMAWPIQLRAQLASTLRLPNHPLMNWPSTDISKLNKVFKNQNSEAQIVS
TTSDLPTQKKIAKRKQQPENIRKLEPLKISEKFVPTLLSPTESNSEISTCSSNSKETTKQ
DKIFTCQICNRSFGYKHVLQNHERTHTGEKPFECSECHKRFTRDHHLKTHMRLHTGEKPY
SCSHCDRQFVQVANLRRHLRVHTGERPYNCDICESRFSDSNQLKAHIMSHSSSEKPFECE
KCNVRFRKREHLINHKCGSPLNENSDDSIELAATNINLVNDGLLKPPLKKFCNFPSAFLG
LPLQIPEQTEPEDLSMHTPRSNLSNDDFEELDDAAAMYLKLKQRQLEKSAIEALTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g14781.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 172 | 209 | 1.6E-11 |
| 11 | g14781.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 210 | 236 | 6.5E-16 |
| 13 | g14781.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 237 | 262 | 1.9E-15 |
| 10 | g14781.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 263 | 328 | 1.7E-17 |
| 24 | g14781.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - |
| 23 | g14781.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - |
| 5 | g14781.t1 | PANTHER | PTHR24390:SF151 | PROTEIN KRUEPPEL | 88 | 319 | 8.0E-82 |
| 6 | g14781.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 88 | 319 | 8.0E-82 |
| 2 | g14781.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 184 | 206 | 0.0049 |
| 3 | g14781.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 212 | 234 | 0.0021 |
| 1 | g14781.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 240 | 262 | 2.2E-4 |
| 4 | g14781.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 268 | 290 | 0.0038 |
| 17 | g14781.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 186 | 206 | - |
| 15 | g14781.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 214 | 234 | - |
| 14 | g14781.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 242 | 262 | - |
| 16 | g14781.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 270 | 290 | - |
| 25 | g14781.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 184 | 211 | 15.895 |
| 29 | g14781.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 212 | 239 | 17.205 |
| 26 | g14781.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 240 | 267 | 16.83 |
| 27 | g14781.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 268 | 295 | 11.032 |
| 28 | g14781.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 297 | 325 | 8.642 |
| 19 | g14781.t1 | SMART | SM00355 | c2h2final6 | 184 | 206 | 0.0064 |
| 21 | g14781.t1 | SMART | SM00355 | c2h2final6 | 212 | 234 | 0.037 |
| 18 | g14781.t1 | SMART | SM00355 | c2h2final6 | 240 | 262 | 2.7E-4 |
| 22 | g14781.t1 | SMART | SM00355 | c2h2final6 | 268 | 290 | 0.0071 |
| 20 | g14781.t1 | SMART | SM00355 | c2h2final6 | 297 | 317 | 110.0 |
| 9 | g14781.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 182 | 234 | 1.04E-15 |
| 8 | g14781.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 221 | 277 | 2.39E-20 |
| 7 | g14781.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 262 | 315 | 4.37E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | MF |
KEGG
Orthology
- This transcript has been annotated with K15618 (B-cell lymphoma 6 protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed