General information for g14790.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucuronosyltransferase 2C1 .
Parent gene
- The parent gene g14790 is located on chr_4: 2353427..2358634 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14790 | g14790.t1 | isoform | g14790.t1 | 2353427 | 2358634 |
| chr_4 | g14790 | g14790.t1 | exon | g14790.t1.exon1 | 2353427 | 2353857 |
| chr_4 | g14790 | g14790.t1 | cds | g14790.t1.CDS1 | 2353427 | 2353857 |
| chr_4 | g14790 | g14790.t1 | exon | g14790.t1.exon2 | 2353910 | 2354249 |
| chr_4 | g14790 | g14790.t1 | cds | g14790.t1.CDS2 | 2353910 | 2354249 |
| chr_4 | g14790 | g14790.t1 | exon | g14790.t1.exon3 | 2354306 | 2354549 |
| chr_4 | g14790 | g14790.t1 | cds | g14790.t1.CDS3 | 2354306 | 2354549 |
| chr_4 | g14790 | g14790.t1 | exon | g14790.t1.exon4 | 2354608 | 2355076 |
| chr_4 | g14790 | g14790.t1 | cds | g14790.t1.CDS4 | 2354608 | 2355076 |
| chr_4 | g14790 | g14790.t1 | exon | g14790.t1.exon5 | 2358112 | 2358634 |
| chr_4 | g14790 | g14790.t1 | cds | g14790.t1.CDS5 | 2358112 | 2358634 |
| chr_4 | g14790 | g14790.t1 | TSS | g14790.t1 | NA | NA |
| chr_4 | g14790 | g14790.t1 | TTS | g14790.t1 | NA | NA |
Sequences
>g14790.t1 Gene=g14790 Length=2007
ATGACAGAAGCAATAAGTATAGGTTTCAACAAAAAGAAAAGTACCGCTGTCGCTTTCCTA
GATATTCAGAAAGCTTTTGACAAAGTTTGGCATGACGGTTTATTGCATAAACTTCTCCTA
AATAATTACCCTTTACATTTAATTAAATTAATCAAATCCTATCTTACAGATAGGTCAGCA
GTAGTTAGCTTAAAACAATCTGTTTCAAATCCTTATCATGTCAGTGCTGGTGTTCCTCAA
GGCAGTTTACTTGCTCCTCATTTATTTAACATATTCATCAACGACATCCCAATACCTAAA
GATGCTAAATTGTCATTATTTGCAGATGACACTGCTTTGGCAGTTGAAGTTAATTGGAAG
AATCTCAAATTAGCGAAAAAGAAAGCTTTAAGTTCGTTGGATTTGCTAGTTAAGTTTTTC
GACAAATGGAACATCAAAATTAATGAATCAAAAACTAAATTTATCATGTTTAGTAAGTCA
AGAGTGATGCTAAACAGAACTGAAGTTGATCAAATTAACTTTGGAGTTTTCCCTTATCCA
AGTAAATCTCATTCAATTCTTGGACAAGAACTTTTCAAAGTGCTTGCACAACGTGGACAT
CAAGTAACTTTTTTAAGTCCATATCCTTTTAAAACTAAATTTCATGAAAATTATAAAGAT
ATCGCAATTAAGTCACAAGGACTTTTTGACGCATTTAATGAAGAACTCGATGGATCTTTT
GAAGCAAACAAATTAAATTTTTTTGCAATGCTCAAATATTGGATTGAAAATATCGCAAGA
ATGCAAGAATTTACTCTAAGTGACCCAGCAGTTCAAGAACTTTTAAAAAGTGATGAAAAG
TTTGATTTATGTGTAATCGAGTTTTTAATGAACGAGAGTTTACTCGGATTCGGTGGGCAT
TTTGGGTGTAAAATAATTGCAATGAGCACATTAGGACAAGTGAAATATATCAACGATATG
GTTCATAGTCCTATGCCATTATCAACTGTATGTCATCCGTTCCTGAGTTTCACTGATCGA
ATGACATTCTTTCAACGACTTGAAAATGTTTTTACAACACTTTTTGAGGATACAATGTTT
TATTTTTATCATTATCCTCTTCAGAGTGCAATTTACGATAAATATTTTAAAAAAGATAAA
CCATCATTCAACCACATGTTGAAGCATTCGGTATCTTTAGTTTTTCTTAACACTCATTAT
AGCTTAAATTATCCACAAGCATATCTTCCAAATATGATCGAAATTGGAGGATTTCATGTA
AAAAACACAACTAATCCATTACCAAAAGATATTGAAGATTTTATTGAATCAGCAAAAGAA
GGAGTTATTTATTTTTCACTCGGTGGAAACTTAAGACCTTCAAAAATGAGTGCTGAAAAG
AAGCAAGCCATTATTTCAGCTCTTTCTAAACTTAAGCAAAAGGTAATTTGGAAGTGGGAC
GAAGAGTTGAATGTTGATAAAAAGAAATTTATGGTTCGTAAATGGTTTCCACAAGATGAT
ATTTTATCTCATAAAAATGTGAAATTATTTGTAACACATGGAGGATTATTGAGCGCTACA
GAGGCAATTATGCGAGAAAAACCGATACTAGGCATTCCTATATTTGGTGATCAAATGATG
AATATGGCACGAGCAGAGTTGCTTGGATGGGGTGTGCAAGTAACATATCCTAATTTAACA
GAAACATCTTTAACATGGGCATTAAAGGAAGCTCTAACAAATAAAAAATATAAAGAAAAT
GTAATAAAAATTGCCGAACGATTGCGTGATCAACAAAATTCACCAATGGATAAAGCAGTT
TATTGGACAGAATATGTGCTGCGTCATGAGGGTGCATATTTTATGCAAACTTCAGCATCT
TCATTGTCGTTCATTGAGTACAATAATTTAGATATATATGCATTATTTGCATTTGTCATT
TTAACTGCATTCTTTTTGCAAATTTTTATTATAAGTAAAATTTACAAAAAGGTTTTTTCA
AAAAAAACTAAAGAAAAAAGCATGTGA
>g14790.t1 Gene=g14790 Length=668
MTEAISIGFNKKKSTAVAFLDIQKAFDKVWHDGLLHKLLLNNYPLHLIKLIKSYLTDRSA
VVSLKQSVSNPYHVSAGVPQGSLLAPHLFNIFINDIPIPKDAKLSLFADDTALAVEVNWK
NLKLAKKKALSSLDLLVKFFDKWNIKINESKTKFIMFSKSRVMLNRTEVDQINFGVFPYP
SKSHSILGQELFKVLAQRGHQVTFLSPYPFKTKFHENYKDIAIKSQGLFDAFNEELDGSF
EANKLNFFAMLKYWIENIARMQEFTLSDPAVQELLKSDEKFDLCVIEFLMNESLLGFGGH
FGCKIIAMSTLGQVKYINDMVHSPMPLSTVCHPFLSFTDRMTFFQRLENVFTTLFEDTMF
YFYHYPLQSAIYDKYFKKDKPSFNHMLKHSVSLVFLNTHYSLNYPQAYLPNMIEIGGFHV
KNTTNPLPKDIEDFIESAKEGVIYFSLGGNLRPSKMSAEKKQAIISALSKLKQKVIWKWD
EELNVDKKKFMVRKWFPQDDILSHKNVKLFVTHGGLLSATEAIMREKPILGIPIFGDQMM
NMARAELLGWGVQVTYPNLTETSLTWALKEALTNKKYKENVIKIAERLRDQQNSPMDKAV
YWTEYVLRHEGAYFMQTSASSLSFIEYNNLDIYALFAFVILTAFFLQIFIISKIYKKVFS
KKTKEKSM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g14790.t1 | CDD | cd03784 | GT1_Gtf-like | 176 | 602 | 3.75667E-57 |
| 9 | g14790.t1 | Coils | Coil | Coil | 574 | 594 | - |
| 8 | g14790.t1 | Coils | Coil | Coil | 668 | 668 | - |
| 7 | g14790.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 421 | 590 | 1.7E-43 |
| 3 | g14790.t1 | PANTHER | PTHR48043:SF10 | EG:EG0003.4 PROTEIN-RELATED | 178 | 638 | 2.2E-113 |
| 4 | g14790.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 178 | 638 | 2.2E-113 |
| 1 | g14790.t1 | Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 9 | 177 | 4.8E-31 |
| 2 | g14790.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 308 | 664 | 1.0E-78 |
| 11 | g14790.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 631 | - |
| 12 | g14790.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 632 | 655 | - |
| 10 | g14790.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 656 | 668 | - |
| 15 | g14790.t1 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 495 | 538 | - |
| 16 | g14790.t1 | ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1 | 191 | 19.474 |
| 5 | g14790.t1 | SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 16 | 159 | 8.15E-9 |
| 6 | g14790.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 173 | 612 | 3.49E-100 |
| 14 | g14790.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 632 | 654 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
