General information for g14818.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14818 is located on chr_4: 2532243..2533419 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14818 | g14818.t2 | TSS | g14818.t2 | 2532213 | 2532213 |
| chr_4 | g14818 | g14818.t2 | isoform | g14818.t2 | 2532243 | 2533419 |
| chr_4 | g14818 | g14818.t2 | exon | g14818.t2.exon1 | 2532243 | 2532303 |
| chr_4 | g14818 | g14818.t2 | cds | g14818.t2.CDS1 | 2532243 | 2532303 |
| chr_4 | g14818 | g14818.t2 | exon | g14818.t2.exon2 | 2532425 | 2533419 |
| chr_4 | g14818 | g14818.t2 | cds | g14818.t2.CDS2 | 2532425 | 2532672 |
| chr_4 | g14818 | g14818.t2 | TTS | g14818.t2 | 2533523 | 2533523 |
Sequences
>g14818.t2 Gene=g14818 Length=1056
ATGTCAATAAAATTTAAGCCTGTGACTCATTGCATATTTGATATGGATGGATTATTGTTA
GACACTGAAGGACTTTATCATCAATTAACTCAAGAAATTATTGACAGATATCACAAAAAT
CCTCGTAAATTTTACACTATTGAAATTCAAGCTCAAATGATGGGAATTCCAATAAGAGAA
GAAGGAAAAAGAATTGCAGAGATTTTTGATTTGCCTTTTACTCCTGATGAATATGTTGAA
ATGGTTCGAAAAGAAATTCCGGAATTAATGAAGAATTGTCAGAAATGTAAAGGTAATCAA
AAATTGTAAACACTGTTAATTTTTTTAAATTTCAAAAATTTTACTAAAAAAATATTTTTT
CTAAAAAATTTGAAATTTCAAAATTTTATTTAAAATTAATTTGAAATTAAAGAAATTCTG
CAAGATTTTCCAGAAAGTTCTTTTAAAACAAAAGTTTTTAAATAAGAATGTTTTCTTTTT
AAAATCTTTAAAATTTTAGGTGCTGAATCGTTAATAAAACATCTTCATTCCCATAAAATC
CCAATTTGTGTTGCAACTGCAAGTGGACGTGAATCTTTTGCAGCAAAATCAACAAACCAT
AAAGAATTTTTTAAACTTTTCAATCACATTCTTTTGGGAGGAACTGATGATGAAGTAAAG
CATGGAAAACCGGCTCCAGACATTTTTCTTATTGCTGCCAAAAGATTTAATGATAATGTG
AAACCTGAAAATGTAAGTCTTAAAAATTTAAAAAGCTACAAAAGATAGGTAGCTTACAAG
AAGAATTTTAAACAAACAAAGCTTGGACACTTTAAATTTATTGTTTGGATTGGAAATTTT
TCTACAATTTTTTTTACTACTTAAATAATTATTTTGCAGTGCCTTGTTTTTGAAGATGCA
CCGAATGGACTCAAAGCAGCTATTGCAGCTGGTATGCAATGTGTAATGATTCCAGATCCA
AATATTTCTGATAAACATAAAAATGGTGCAACACTTGTTTTAAATTCACTTGATGATTTC
AAACCTGAAGATTTTGGACTGCCTGCTAGAAACTAA
>g14818.t2 Gene=g14818 Length=102
MSIKFKPVTHCIFDMDGLLLDTEGLYHQLTQEIIDRYHKNPRKFYTIEIQAQMMGIPIRE
EGKRIAEIFDLPFTPDEYVEMVRKEIPELMKNCQKCKGNQKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14818.t2 | Gene3D | G3DSA:1.10.150.240 | Putative phosphatase; domain 2 | 22 | 93 | 0.0e+00 |
| 2 | g14818.t2 | PANTHER | PTHR18901 | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 | 4 | 102 | 0.0e+00 |
| 1 | g14818.t2 | Pfam | PF13419 | Haloacid dehalogenase-like hydrolase | 11 | 88 | 1.9e-06 |
| 3 | g14818.t2 | SUPERFAMILY | SSF56784 | HAD-like | 8 | 90 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed