General information for g14822.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Fatty acid synthase.
Parent gene
- The parent gene g14822 is located on chr_4: 2538431..2539536 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14822 | g14822.t1 | isoform | g14822.t1 | 2538431 | 2539536 |
| chr_4 | g14822 | g14822.t1 | exon | g14822.t1.exon1 | 2538431 | 2538909 |
| chr_4 | g14822 | g14822.t1 | cds | g14822.t1.CDS1 | 2538431 | 2538909 |
| chr_4 | g14822 | g14822.t1 | exon | g14822.t1.exon2 | 2538976 | 2539274 |
| chr_4 | g14822 | g14822.t1 | cds | g14822.t1.CDS2 | 2538976 | 2539274 |
| chr_4 | g14822 | g14822.t1 | exon | g14822.t1.exon3 | 2539328 | 2539536 |
| chr_4 | g14822 | g14822.t1 | cds | g14822.t1.CDS3 | 2539328 | 2539536 |
| chr_4 | g14822 | g14822.t1 | TSS | g14822.t1 | NA | NA |
| chr_4 | g14822 | g14822.t1 | TTS | g14822.t1 | NA | NA |
Sequences
>g14822.t1 Gene=g14822 Length=987
ATGCGTGAAAATGAAAACGATTTATCAAAACTTCCAATTAATGTCACACCTAGATTTTAT
TGTAATTCTGAACATTCATACATCATTGTCGGTAGTCTTGGTGGACTTGGACTTGAATTT
TCACAGTGGTTAATTGGTCGAAAATGTCATAAATTAATTTTAAGTTCAAGTCGTGGGATC
AAAAATCAATATCAAGCATTTAAAATTAAGTATTTTAAATCATTTGGAGTTGAAGTTGTT
GTGAGCACATCAAATATTCTAATTGAAGCTGGTTGTGAACAACTCATTAAAACAGCAATT
ACTTTAGGCCCAGTTGGAGAAATTTTTAATTTTGCGGCTGTCATTCGAGATGCAGAATTT
GAAAATCATACAATTGAAGATTTCAATAAATCGTTGGCACCAAAAGCTTTAGCTACAAAA
TTTTTGCATAGATTATCACTTAAATATTGTCCAAAATTGAAATATTTTGTTGGTTATTCA
AGTGTCATGTATGGTCGAGGATATTCAGGATTGCCTGCAAAAGTTATACAATGGGGTCCG
TTTGGCGATGTCGGTTTGCTTGCTGATGTTGAATTAAATCAAAGAAAGAAGTTAAATTTT
GAATCTCCAATGCAATCACTTCGATCATTTTTAGAACAACACGATATTCTTCTTCGTCAT
CCAGAACCAATTGTTGCTTGTACAGTGGCTGTAAAGAAACACACAAAATCTGATACTAAA
AAAAGTTTCATTGACATGTTGATGGAAATTTTAAATATTGAAGATCGCAATTCAATTTCA
ATGAGTTCAACATTCTCGCAACTTGGAATTGATTCACTTGCTGGTATTGAAATGCAACAA
ATGATTGAAAAAGAGTATAACACAAATTTTGGACCGAATGAATTAAGATCTTTAACAATT
GCTGAATTAGAAGCAAAAATTAATGCAAATATAAACCAACAAAATCGATTTTTTCAAACT
ATTGAAGAAAACATCTCAAAAAATTAA
>g14822.t1 Gene=g14822 Length=328
MRENENDLSKLPINVTPRFYCNSEHSYIIVGSLGGLGLEFSQWLIGRKCHKLILSSSRGI
KNQYQAFKIKYFKSFGVEVVVSTSNILIEAGCEQLIKTAITLGPVGEIFNFAAVIRDAEF
ENHTIEDFNKSLAPKALATKFLHRLSLKYCPKLKYFVGYSSVMYGRGYSGLPAKVIQWGP
FGDVGLLADVELNQRKKLNFESPMQSLRSFLEQHDILLRHPEPIVACTVAVKKHTKSDTK
KSFIDMLMEILNIEDRNSISMSSTFSQLGIDSLAGIEMQQMIEKEYNTNFGPNELRSLTI
AELEAKINANINQQNRFFQTIEENISKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g14822.t1 | Gene3D | G3DSA:3.40.50.720 | - | 4 | 237 | 0.0000000 |
| 11 | g14822.t1 | Gene3D | G3DSA:1.10.1200.10 | - | 238 | 318 | 0.0000000 |
| 4 | g14822.t1 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 2 | 170 | 0.0000000 |
| 6 | g14822.t1 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 2 | 170 | 0.0000000 |
| 3 | g14822.t1 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 170 | 315 | 0.0000000 |
| 5 | g14822.t1 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 170 | 315 | 0.0000000 |
| 2 | g14822.t1 | Pfam | PF08659 | KR domain | 26 | 163 | 0.0000000 |
| 1 | g14822.t1 | Pfam | PF00550 | Phosphopantetheine attachment site | 245 | 305 | 0.0000001 |
| 12 | g14822.t1 | ProSiteProfiles | PS50075 | Carrier protein (CP) domain profile. | 237 | 314 | 11.3020000 |
| 9 | g14822.t1 | SMART | SM00822 | This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. | 25 | 184 | 0.0000004 |
| 7 | g14822.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 25 | 197 | 0.0000000 |
| 8 | g14822.t1 | SUPERFAMILY | SSF47336 | ACP-like | 239 | 308 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed