Gene loci information

Transcript annotation

  • This transcript has been annotated as Scoloptoxin SSD14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14831 g14831.t1 TSS g14831.t1 2575951 2575951
chr_4 g14831 g14831.t1 isoform g14831.t1 2576018 2578165
chr_4 g14831 g14831.t1 exon g14831.t1.exon1 2576018 2576148
chr_4 g14831 g14831.t1 cds g14831.t1.CDS1 2576018 2576148
chr_4 g14831 g14831.t1 exon g14831.t1.exon2 2576200 2576874
chr_4 g14831 g14831.t1 cds g14831.t1.CDS2 2576200 2576874
chr_4 g14831 g14831.t1 exon g14831.t1.exon3 2577238 2578165
chr_4 g14831 g14831.t1 cds g14831.t1.CDS3 2577238 2578165
chr_4 g14831 g14831.t1 TTS g14831.t1 2578251 2578251

Sequences

>g14831.t1 Gene=g14831 Length=1734
ATGAAGACTCAATTACCGAAGAAATCTTCTAAACTTCTTATAACAGTTATTTTGCTGTTA
TGTTTGACAATTATTGGAGCAATTATTGCATCTGCTGTTCTTAAAATTTATTCTACACCA
GAAAGTTCAGAGTTAAACTCAAAAGCAGCCATTGTCACAAATGGCCTCGAATGTGCAACA
TTAGGCAAAAAAATATTTGATCTGGGTGGAAATATTGCTGATGTTGCTGTGACTGTTGTT
TTATGTGAAGGCGTGACATGTCCACAAAGTTCAGGAATTGGTGGTGGATTTTTGCTCAGT
TATTATTCGAAATCTGAAGGAATTGTGAGAACTTTGAATGCTCGTGAAACTGCACCTGCT
GCTGCAACGACTGATATGTATGTTGGTAAACCAAATCTTTCAGTTTCTGGTGGAAAAGCA
GTAGCTGTACCTGGTGAAATTAAAGGACTTTGGGAATTGCATCAAAAATTTGGAAGTTTA
GAATGGAAAACTTTGCTGCAACCTGTGATTGAATTATGTAAAGAAGGTCATGTTGTGTCA
AATTATCTGCAAAATGTTTTTGGTCGTAATGAAGAAAGAATTTTCAATGAACCAAGTTTG
CGAGAAATTTTTATTGATCCTGAAACAAATAAACTTTACAAAGAAGGAGAAAAAGTTAAA
AGATTGAAACTTGCGGAAACACTCGAAATTATTGCTAGAGATGGAGCAGATGCAATTTAT
GGAGGAGGTGAAATCGGAAAAAAGTTGATTGAAGATGTTCAGAGTTATGGTGGAATTTTA
ACCGAAGAAGATTTGATAAATTATGAAGTAAAATGGTCAACATCATTGACATCAAAAATA
ATCAACAATCAAACCCTGCATACTTTTCCAATTCCAAGTAGTGGTGCAATTATAAATTTC
ATTTTTAATGTCCTAAGCAATTATAAACTTTCTCACGATTCTCTAAGTTATCACAGAATT
ATTGAAGCTTTTAAATTTGCTTATGCAAAACGAAGTTATTTGGGTGATGAAAATTCAACT
GAAGTTCTTGAAATGATGGAAAATTTATTAAGTCAAAGTTATGCAAATGAAATTTCTTCT
ATGATTAATGACACAAAAACATTTAATGATGTGAAATATTATGGGCCACTCTATGAAAAT
TCTGAAGATCAAGGAACAGCACATATGTCAATTTTAGCTCCAAACGGTGATGCAATCGTT
GTGACCAACACAATAAATTATTTGCTTGGTGCTTTCTTTAGATCTCAACAAACAGGAATA
ATTTTAAATAATGAAATGGATGATTTTTCCAATCCTGGTGCTCCAAATATTTATGGAATT
CTTCCATCTCCTGCTAACTTTATCAAACCAGGAAAAAATCCATTAAGTTCGATGACTCCA
ACTTTGGTGATTGATGCAAAAGGAGACATTCGGATGATAGTTGGTGGAGCAGGAGGATCG
AAAATTCCAACTGCTATTTTTGCAACAATTTTCAATCATCTTTACTTGGAAAAATCTTTA
AGTGAAGCAATTGAAGCAAGAAGAATCCACCATCAATTGACACCTCTAGAATTACAGTTT
GAAACTAATTTTGATAGCGGAATAATCAAGGAATTGAATGAAAAATTCGAACATTCTTTA
CTTGAAAACAAACCTGATGGAGGATTTGCAGCAGTTACTGGAATTGCTATTACTAATGGC
AAAATAGAAGCAAGTTTTGATCCAAGACGTGGTGGTGGAATTGAAATTTTTTAA

>g14831.t1 Gene=g14831 Length=577
MKTQLPKKSSKLLITVILLLCLTIIGAIIASAVLKIYSTPESSELNSKAAIVTNGLECAT
LGKKIFDLGGNIADVAVTVVLCEGVTCPQSSGIGGGFLLSYYSKSEGIVRTLNARETAPA
AATTDMYVGKPNLSVSGGKAVAVPGEIKGLWELHQKFGSLEWKTLLQPVIELCKEGHVVS
NYLQNVFGRNEERIFNEPSLREIFIDPETNKLYKEGEKVKRLKLAETLEIIARDGADAIY
GGGEIGKKLIEDVQSYGGILTEEDLINYEVKWSTSLTSKIINNQTLHTFPIPSSGAIINF
IFNVLSNYKLSHDSLSYHRIIEAFKFAYAKRSYLGDENSTEVLEMMENLLSQSYANEISS
MINDTKTFNDVKYYGPLYENSEDQGTAHMSILAPNGDAIVVTNTINYLLGAFFRSQQTGI
ILNNEMDDFSNPGAPNIYGILPSPANFIKPGKNPLSSMTPTLVIDAKGDIRMIVGGAGGS
KIPTAIFATIFNHLYLEKSLSEAIEARRIHHQLTPLELQFETNFDSGIIKELNEKFEHSL
LENKPDGGFAAVTGIAITNGKIEASFDPRRGGGIEIF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g14831.t1 Gene3D G3DSA:1.10.246.130 - 276 378 1.4E-30
14 g14831.t1 Gene3D G3DSA:3.60.20.40 - 380 576 7.3E-63
2 g14831.t1 PANTHER PTHR11686 GAMMA GLUTAMYL TRANSPEPTIDASE 8 573 1.3E-218
3 g14831.t1 PANTHER PTHR11686:SF51 GAMMA-GLUTAMYL TRANSPEPTIDASE, ISOFORM A 8 573 1.3E-218
7 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 71 96 7.0E-63
5 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 140 158 7.0E-63
8 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 158 177 7.0E-63
10 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 259 275 7.0E-63
4 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 289 308 7.0E-63
9 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 386 404 7.0E-63
6 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 410 428 7.0E-63
11 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 450 465 7.0E-63
12 g14831.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 475 492 7.0E-63
1 g14831.t1 Pfam PF01019 Gamma-glutamyltranspeptidase 64 572 1.9E-160
16 g14831.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
18 g14831.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -
17 g14831.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 35 577 -
13 g14831.t1 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 46 573 5.02E-142
20 g14831.t1 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 57 569 1.3E-111
19 g14831.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006751 glutathione catabolic process BP
GO:0036374 glutathione hydrolase activity MF

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values