Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Scoloptoxin SSD14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14831 g14831.t2 TSS g14831.t2 2575951 2575951
chr_4 g14831 g14831.t2 isoform g14831.t2 2576871 2578165
chr_4 g14831 g14831.t2 exon g14831.t2.exon1 2576871 2576874
chr_4 g14831 g14831.t2 exon g14831.t2.exon2 2577238 2578165
chr_4 g14831 g14831.t2 cds g14831.t2.CDS1 2577464 2578165
chr_4 g14831 g14831.t2 TTS g14831.t2 2578251 2578251

Sequences

>g14831.t2 Gene=g14831 Length=932
ATGAAGTAAAATGGTCAACATCATTGACATCAAAAATAATCAACAATCAAACCCTGCATA
CTTTTCCAATTCCAAGTAGTGGTGCAATTATAAATTTCATTTTTAATGTCCTAAGCAATT
ATAAACTTTCTCACGATTCTCTAAGTTATCACAGAATTATTGAAGCTTTTAAATTTGCTT
ATGCAAAACGAAGTTATTTGGGTGATGAAAATTCAACTGAAGTTCTTGAAATGATGGAAA
ATTTATTAAGTCAAAGTTATGCAAATGAAATTTCTTCTATGATTAATGACACAAAAACAT
TTAATGATGTGAAATATTATGGGCCACTCTATGAAAATTCTGAAGATCAAGGAACAGCAC
ATATGTCAATTTTAGCTCCAAACGGTGATGCAATCGTTGTGACCAACACAATAAATTATT
TGCTTGGTGCTTTCTTTAGATCTCAACAAACAGGAATAATTTTAAATAATGAAATGGATG
ATTTTTCCAATCCTGGTGCTCCAAATATTTATGGAATTCTTCCATCTCCTGCTAACTTTA
TCAAACCAGGAAAAAATCCATTAAGTTCGATGACTCCAACTTTGGTGATTGATGCAAAAG
GAGACATTCGGATGATAGTTGGTGGAGCAGGAGGATCGAAAATTCCAACTGCTATTTTTG
CAACAATTTTCAATCATCTTTACTTGGAAAAATCTTTAAGTGAAGCAATTGAAGCAAGAA
GAATCCACCATCAATTGACACCTCTAGAATTACAGTTTGAAACTAATTTTGATAGCGGAA
TAATCAAGGAATTGAATGAAAAATTCGAACATTCTTTACTTGAAAACAAACCTGATGGAG
GATTTGCAGCAGTTACTGGAATTGCTATTACTAATGGCAAAATAGAAGCAAGTTTTGATC
CAAGACGTGGTGGTGGAATTGAAATTTTTTAA

>g14831.t2 Gene=g14831 Length=233
MMENLLSQSYANEISSMINDTKTFNDVKYYGPLYENSEDQGTAHMSILAPNGDAIVVTNT
INYLLGAFFRSQQTGIILNNEMDDFSNPGAPNIYGILPSPANFIKPGKNPLSSMTPTLVI
DAKGDIRMIVGGAGGSKIPTAIFATIFNHLYLEKSLSEAIEARRIHHQLTPLELQFETNF
DSGIIKELNEKFEHSLLENKPDGGFAAVTGIAITNGKIEASFDPRRGGGIEIF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g14831.t2 Gene3D G3DSA:3.60.20.40 - 36 232 0
2 g14831.t2 PANTHER PTHR11686 GAMMA GLUTAMYL TRANSPEPTIDASE 1 229 0
3 g14831.t2 PANTHER PTHR11686:SF51 GAMMA-GLUTAMYL TRANSPEPTIDASE, ISOFORM A 1 229 0
7 g14831.t2 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 42 60 0
6 g14831.t2 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 66 84 0
4 g14831.t2 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 106 121 0
5 g14831.t2 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 131 148 0
1 g14831.t2 Pfam PF01019 Gamma-glutamyltranspeptidase 2 228 0
8 g14831.t2 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 229 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006751 glutathione catabolic process BP
GO:0036374 glutathione hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed