General information for g14831.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Scoloptoxin SSD14.
Parent gene
- The parent gene g14831 is located on chr_4: 2577240..2578165 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14831 | g14831.t3 | isoform | g14831.t3 | 2577240 | 2578165 |
| chr_4 | g14831 | g14831.t3 | exon | g14831.t3.exon1 | 2577240 | 2578165 |
| chr_4 | g14831 | g14831.t3 | cds | g14831.t3.CDS1 | 2577464 | 2578165 |
| chr_4 | g14831 | g14831.t3 | TTS | g14831.t3 | 2578251 | 2578251 |
| chr_4 | g14831 | g14831.t3 | TSS | g14831.t3 | NA | NA |
Sequences
>g14831.t3 Gene=g14831 Length=926
TAAAATGGTCAACATCATTGACATCAAAAATAATCAACAATCAAACCCTGCATACTTTTC
CAATTCCAAGTAGTGGTGCAATTATAAATTTCATTTTTAATGTCCTAAGCAATTATAAAC
TTTCTCACGATTCTCTAAGTTATCACAGAATTATTGAAGCTTTTAAATTTGCTTATGCAA
AACGAAGTTATTTGGGTGATGAAAATTCAACTGAAGTTCTTGAAATGATGGAAAATTTAT
TAAGTCAAAGTTATGCAAATGAAATTTCTTCTATGATTAATGACACAAAAACATTTAATG
ATGTGAAATATTATGGGCCACTCTATGAAAATTCTGAAGATCAAGGAACAGCACATATGT
CAATTTTAGCTCCAAACGGTGATGCAATCGTTGTGACCAACACAATAAATTATTTGCTTG
GTGCTTTCTTTAGATCTCAACAAACAGGAATAATTTTAAATAATGAAATGGATGATTTTT
CCAATCCTGGTGCTCCAAATATTTATGGAATTCTTCCATCTCCTGCTAACTTTATCAAAC
CAGGAAAAAATCCATTAAGTTCGATGACTCCAACTTTGGTGATTGATGCAAAAGGAGACA
TTCGGATGATAGTTGGTGGAGCAGGAGGATCGAAAATTCCAACTGCTATTTTTGCAACAA
TTTTCAATCATCTTTACTTGGAAAAATCTTTAAGTGAAGCAATTGAAGCAAGAAGAATCC
ACCATCAATTGACACCTCTAGAATTACAGTTTGAAACTAATTTTGATAGCGGAATAATCA
AGGAATTGAATGAAAAATTCGAACATTCTTTACTTGAAAACAAACCTGATGGAGGATTTG
CAGCAGTTACTGGAATTGCTATTACTAATGGCAAAATAGAAGCAAGTTTTGATCCAAGAC
GTGGTGGTGGAATTGAAATTTTTTAA
>g14831.t3 Gene=g14831 Length=233
MMENLLSQSYANEISSMINDTKTFNDVKYYGPLYENSEDQGTAHMSILAPNGDAIVVTNT
INYLLGAFFRSQQTGIILNNEMDDFSNPGAPNIYGILPSPANFIKPGKNPLSSMTPTLVI
DAKGDIRMIVGGAGGSKIPTAIFATIFNHLYLEKSLSEAIEARRIHHQLTPLELQFETNF
DSGIIKELNEKFEHSLLENKPDGGFAAVTGIAITNGKIEASFDPRRGGGIEIF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g14831.t3 | Gene3D | G3DSA:3.60.20.40 | - | 36 | 232 | 0 |
| 2 | g14831.t3 | PANTHER | PTHR11686 | GAMMA GLUTAMYL TRANSPEPTIDASE | 1 | 229 | 0 |
| 3 | g14831.t3 | PANTHER | PTHR11686:SF51 | GAMMA-GLUTAMYL TRANSPEPTIDASE, ISOFORM A | 1 | 229 | 0 |
| 7 | g14831.t3 | PRINTS | PR01210 | Gamma-glutamyltranspeptidase signature | 42 | 60 | 0 |
| 6 | g14831.t3 | PRINTS | PR01210 | Gamma-glutamyltranspeptidase signature | 66 | 84 | 0 |
| 4 | g14831.t3 | PRINTS | PR01210 | Gamma-glutamyltranspeptidase signature | 106 | 121 | 0 |
| 5 | g14831.t3 | PRINTS | PR01210 | Gamma-glutamyltranspeptidase signature | 131 | 148 | 0 |
| 1 | g14831.t3 | Pfam | PF01019 | Gamma-glutamyltranspeptidase | 2 | 228 | 0 |
| 8 | g14831.t3 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 2 | 229 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006751 | glutathione catabolic process | BP |
| GO:0036374 | glutathione hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed