General information for g14845.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Molybdenum cofactor synthesis protein cinnamon.
Parent gene
- The parent gene g14845 is located on chr_4: 2647484..2648172 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14845 | g14845.t3 | isoform | g14845.t3 | 2647484 | 2648172 |
| chr_4 | g14845 | g14845.t3 | exon | g14845.t3.exon1 | 2647484 | 2648172 |
| chr_4 | g14845 | g14845.t3 | cds | g14845.t3.CDS1 | 2647528 | 2648172 |
| chr_4 | g14845 | g14845.t3 | TTS | g14845.t3 | 2648291 | 2648291 |
| chr_4 | g14845 | g14845.t3 | TSS | g14845.t3 | NA | NA |
Sequences
>g14845.t3 Gene=g14845 Length=689
CAGGTGAACTTCAAGAAGGTCACATTTATGACTCAAATACGACAATGTTGAAACTTTTAT
GTGAAAAATTCAATTTTGATGTAAAATTCACGTGTATTGCAAAAGATGATTATGAATCAT
TGAAAAATGTTGTAAGTGCTGCAATCAAAGAATGTCGTGTTATAATCAGTAGTGGTGGTG
TATCAATGGGCGACAAAGATTTCATCAAAAAAGTTCTTATTGATCTCGATTTTAAAATTC
ATTTTGGTAGAGTCAATGTGAAACCAGGAAAACCAATGACTTTTGCGACATTAAATGAAA
ATTCATTTTTTGCATTGCCAGGAAATCCAGTTAGTGCTTTTGTTACTTTTCACCTTTTTG
TGCTTCCTGCTTTGAGATTCATCAGCGGATATTCAGGAATTAAATGCATTTTGCCTTTAA
TCAATGTTGTACTTGAAGATTCTGAATATCATTTGGATGATCGTCCTGAATATGTAAGAG
CAAAAATTTCTTATGATCAAAATACAAATCAATTTACAGCTTTGGTCAATGCTAATCAAA
TTAGCAGCAGAATTGCAAGTCTTATAAATGCTGATGTTTTGCTAAAACTTCCAGGAAGAA
AAGAATATGGAAATTCAATTATAGAAAAAGGAACTAAATTGAAAGCAATGGTTATTAATC
AATTTTTTATAAGTTTTATTAATGAATAA
>g14845.t3 Gene=g14845 Length=214
MLKLLCEKFNFDVKFTCIAKDDYESLKNVVSAAIKECRVIISSGGVSMGDKDFIKKVLID
LDFKIHFGRVNVKPGKPMTFATLNENSFFALPGNPVSAFVTFHLFVLPALRFISGYSGIK
CILPLINVVLEDSEYHLDDRPEYVRAKISYDQNTNQFTALVNANQISSRIASLINADVLL
KLPGRKEYGNSIIEKGTKLKAMVINQFFISFINE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14845.t3 | Gene3D | G3DSA:3.40.980.10 | Molybdenum cofactor biosynthesis proteins | 1 | 119 | 2.3E-36 |
| 9 | g14845.t3 | Gene3D | G3DSA:2.40.340.10 | - | 125 | 207 | 7.7E-19 |
| 3 | g14845.t3 | PANTHER | PTHR10192 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN | 1 | 205 | 2.3E-59 |
| 2 | g14845.t3 | Pfam | PF00994 | Probable molybdopterin binding domain | 2 | 111 | 3.5E-18 |
| 1 | g14845.t3 | Pfam | PF03454 | MoeA C-terminal region (domain IV) | 138 | 202 | 4.0E-9 |
| 7 | g14845.t3 | ProSitePatterns | PS01079 | Molybdenum cofactor biosynthesis proteins signature 2. | 47 | 81 | - |
| 6 | g14845.t3 | SMART | SM00852 | MoCF_biosynth_3a | 3 | 112 | 1.0E-11 |
| 5 | g14845.t3 | SUPERFAMILY | SSF53218 | Molybdenum cofactor biosynthesis proteins | 2 | 116 | 6.02E-28 |
| 4 | g14845.t3 | SUPERFAMILY | SSF63867 | MoeA C-terminal domain-like | 124 | 205 | 3.66E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | BP |
| GO:0032324 | molybdopterin cofactor biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
