General information for g14846.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 6.
Parent gene
- The parent gene g14846 is located on chr_4: 2648577..2651281 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14846 | g14846.t1 | isoform | g14846.t1 | 2648577 | 2651281 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon1 | 2648577 | 2648627 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS1 | 2648577 | 2648627 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon2 | 2648772 | 2649414 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS2 | 2648772 | 2649414 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon3 | 2649569 | 2649702 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS3 | 2649569 | 2649702 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon4 | 2649879 | 2649933 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS4 | 2649879 | 2649933 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon5 | 2649996 | 2650153 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS5 | 2649996 | 2650153 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon6 | 2650218 | 2650253 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS6 | 2650218 | 2650253 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon7 | 2650356 | 2650465 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS7 | 2650356 | 2650465 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon8 | 2650527 | 2650752 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS8 | 2650527 | 2650752 |
| chr_4 | g14846 | g14846.t1 | exon | g14846.t1.exon9 | 2650802 | 2651281 |
| chr_4 | g14846 | g14846.t1 | cds | g14846.t1.CDS9 | 2650802 | 2651281 |
| chr_4 | g14846 | g14846.t1 | TSS | g14846.t1 | NA | NA |
| chr_4 | g14846 | g14846.t1 | TTS | g14846.t1 | NA | NA |
Sequences
>g14846.t1 Gene=g14846 Length=1893
ATGGTTTCAATTAAAAGATTTTTTATAAAATTAAATTTTATCTTCCTTCAAGCACTCAAG
AGACAATATTACACAGTTCAACTTTTGATTATGATTTTTGCTTTGACATTTGCTGCTCTT
TATATTTTAATCACAATCAACAATGATCCATTACTAGTTGATCAGCCTTACATTTATATT
GAACCATTAGCTTCATATTATCGATTTAAACATTCACCATTAAAAAAAGATTGGCATAAT
TATGAATTTATGGATTTCGAAGCATCTCGAGTTGGTCCTGGTGAGAATGGAACTGGAGTT
TTTTTATCAGGTGACGAAGCTTCTCTTGCTCAACAAATTTTTGAAGAAAATAAACACAAT
GGACTTGTAAGTGACAAAATAGCACGTGATCGAAGTTTACCTGATACTCGACCACCAGAA
TGCATGACACGAACTTATTTGAGTGATTTGCCAAAAGTTTCAATTATTATTCCATTTCAT
AATGAAATTTTAAGCACTTTAACTCGAACTGTTCACAGTGTTTTTAATCGATCGCCACCT
GAATTGCTAAAGGAAGTGATTTTGGTCAATGATCATAGTGACAAAGAACATTGTTATGGT
GAACTTGAGGAATACATTGCAACACATTTTGATATCAATAAAGTAAGAATTTTAGTGCTG
ACAAAGAGATCGGGATTGATGTGGGCGAGATTAGCTGGTGCTCGTGCTGCGAGTGGTGAT
GTGTTGATTTTTATGGATTGTCACACTGAAGCTAATATCAATTGGTTACCACCACTTATA
GAACCAATTGCTTTGAATTATCGTACTTGTGTTTGTCCTTACATTGATGTCATAAATGCA
AAAGATTATCACTACACAGGTCTTCAACATGGAACTCGAGGAGTTTTCAACTGGCAATTG
ATTTATCAATTTTTACCACTTCGACCTGAAGATCAATCTGACCCAACTGAACCTTTCAAA
TCACCCGTCATGATGGGTTGTGTTTTTGCAATTTCTGCTAAATTTTTCTGGGAACTTGGT
GGGTACGATCCAGCACTTGAGATTTGGGGCGGTGAGCAGTATGAATTGAGTTTTAAGGTT
TGGCTTTGTAACGGACAGCAACTTGATGCGCCATGTTCACGAGTTGGTCATCTTTATCGG
CCTCGACCATTCACAAATGCTGGAAATCATACAAATTATGTTTCATACAACTTTAAGCGT
GTTGCAGAAGTTTGGATGGATGAATATGCTCAATATATTTATAAACGTGATGAAAAGAAA
TGGAATGAAATTGATGTTGGTGATATTTCGCATATGATGAATCTTAAGAAAAAACTAAAT
TGCAAACCATTTAAATATTTTTTGGATGAAGTTGCTCCTGATATGCTTGATCGATATCCT
TATATTGAACCACCTTCATTTGCTAGTGGTGCTATTCAATCAATAGCAAATCCACAATAT
TGTGTTGACACATTAGAAACTGAACGAGAAAAACAAGTTGGAATTTATAGATGTCGTTCT
AATCTTGTCAATCCAGGTTGGCATCAAGAATTTAGACTTCGAAATCATCGTGATATTTCA
ATTGAACATTCAAACAGTGACTGCCTTGATTTTAATAATAAAAGAATTCTTTATTACGCT
TGTAAATTTAATCAAGAAAATCAATACTTTCGATATGATTTAAAAACTCAGCAAATTTAT
TGTGGATCAAAATGGCAAAATCAATGCATGGATATTGATATGAGAACAAAATTACTAATT
TATGCACCATGTGATGAAACTAAATTGACACAGAAATGGAAATGGGGATTTTTAAATGAA
ACAATGTTAAATGATTGGACAAATTATGGTAAACCAATCAATGATGAAAAGGAAATTGAA
GATTTACTAAAAGAAGTTATAAATGATAAATAA
>g14846.t1 Gene=g14846 Length=630
MVSIKRFFIKLNFIFLQALKRQYYTVQLLIMIFALTFAALYILITINNDPLLVDQPYIYI
EPLASYYRFKHSPLKKDWHNYEFMDFEASRVGPGENGTGVFLSGDEASLAQQIFEENKHN
GLVSDKIARDRSLPDTRPPECMTRTYLSDLPKVSIIIPFHNEILSTLTRTVHSVFNRSPP
ELLKEVILVNDHSDKEHCYGELEEYIATHFDINKVRILVLTKRSGLMWARLAGARAASGD
VLIFMDCHTEANINWLPPLIEPIALNYRTCVCPYIDVINAKDYHYTGLQHGTRGVFNWQL
IYQFLPLRPEDQSDPTEPFKSPVMMGCVFAISAKFFWELGGYDPALEIWGGEQYELSFKV
WLCNGQQLDAPCSRVGHLYRPRPFTNAGNHTNYVSYNFKRVAEVWMDEYAQYIYKRDEKK
WNEIDVGDISHMMNLKKKLNCKPFKYFLDEVAPDMLDRYPYIEPPSFASGAIQSIANPQY
CVDTLETEREKQVGIYRCRSNLVNPGWHQEFRLRNHRDISIEHSNSDCLDFNNKRILYYA
CKFNQENQYFRYDLKTQQIYCGSKWQNQCMDIDMRTKLLIYAPCDETKLTQKWKWGFLNE
TMLNDWTNYGKPINDEKEIEDLLKEVINDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g14846.t1 | CDD | cd02510 | pp-GalNAc-T | 154 | 452 | 2.52945E-153 |
| 12 | g14846.t1 | CDD | cd00161 | RICIN | 470 | 595 | 6.73926E-11 |
| 8 | g14846.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 73 | 462 | 2.4E-151 |
| 7 | g14846.t1 | Gene3D | G3DSA:2.80.10.50 | - | 463 | 609 | 3.1E-20 |
| 3 | g14846.t1 | PANTHER | PTHR11675:SF41 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 10 | 71 | 607 | 3.0E-151 |
| 4 | g14846.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 71 | 607 | 3.0E-151 |
| 2 | g14846.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 154 | 339 | 4.6E-29 |
| 1 | g14846.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 469 | 593 | 5.1E-17 |
| 9 | g14846.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 22 | - |
| 11 | g14846.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 23 | 44 | - |
| 10 | g14846.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 45 | 630 | - |
| 16 | g14846.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 468 | 596 | 15.212 |
| 15 | g14846.t1 | SMART | SM00458 | ricin_3 | 469 | 596 | 3.9E-5 |
| 6 | g14846.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 130 | 454 | 2.25E-56 |
| 5 | g14846.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 462 | 595 | 4.92E-17 |
| 14 | g14846.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 23 | 45 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
