General information for g14846.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 6.
Parent gene
- The parent gene g14846 is located on chr_4: 2648577..2651281 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14846 | g14846.t2 | isoform | g14846.t2 | 2648577 | 2651281 |
| chr_4 | g14846 | g14846.t2 | exon | g14846.t2.exon1 | 2648577 | 2649414 |
| chr_4 | g14846 | g14846.t2 | cds | g14846.t2.CDS1 | 2648811 | 2649414 |
| chr_4 | g14846 | g14846.t2 | exon | g14846.t2.exon2 | 2649569 | 2649702 |
| chr_4 | g14846 | g14846.t2 | cds | g14846.t2.CDS2 | 2649569 | 2649702 |
| chr_4 | g14846 | g14846.t2 | exon | g14846.t2.exon3 | 2649879 | 2649933 |
| chr_4 | g14846 | g14846.t2 | cds | g14846.t2.CDS3 | 2649879 | 2649933 |
| chr_4 | g14846 | g14846.t2 | exon | g14846.t2.exon4 | 2649996 | 2650153 |
| chr_4 | g14846 | g14846.t2 | cds | g14846.t2.CDS4 | 2649996 | 2650153 |
| chr_4 | g14846 | g14846.t2 | exon | g14846.t2.exon5 | 2650218 | 2650253 |
| chr_4 | g14846 | g14846.t2 | cds | g14846.t2.CDS5 | 2650218 | 2650253 |
| chr_4 | g14846 | g14846.t2 | exon | g14846.t2.exon6 | 2650356 | 2650465 |
| chr_4 | g14846 | g14846.t2 | cds | g14846.t2.CDS6 | 2650356 | 2650465 |
| chr_4 | g14846 | g14846.t2 | exon | g14846.t2.exon7 | 2650527 | 2650752 |
| chr_4 | g14846 | g14846.t2 | cds | g14846.t2.CDS7 | 2650527 | 2650752 |
| chr_4 | g14846 | g14846.t2 | exon | g14846.t2.exon8 | 2650802 | 2651281 |
| chr_4 | g14846 | g14846.t2 | cds | g14846.t2.CDS8 | 2650802 | 2651281 |
| chr_4 | g14846 | g14846.t2 | TSS | g14846.t2 | NA | NA |
| chr_4 | g14846 | g14846.t2 | TTS | g14846.t2 | NA | NA |
Sequences
>g14846.t2 Gene=g14846 Length=2037
ATGGTTTCAATTAAAAGATTTTTTATAAAATTAAATTTTATCTTCCTTCAAGTAAGTTAA
AAACAAAAAAAAATATTTTTTCTTTATTAATAAACTAGAAAAAGAAGCAAAAAAATTAAA
CTGTCATGTGGAACAACTCATCAATTTAAAGAAATTTTAAAATTTTCACAACACAAGTAA
AAAATTTATTTTTAGGCACTCAAGAGACAATATTACACAGTTCAACTTTTGATTATGATT
TTTGCTTTGACATTTGCTGCTCTTTATATTTTAATCACAATCAACAATGATCCATTACTA
GTTGATCAGCCTTACATTTATATTGAACCATTAGCTTCATATTATCGATTTAAACATTCA
CCATTAAAAAAAGATTGGCATAATTATGAATTTATGGATTTCGAAGCATCTCGAGTTGGT
CCTGGTGAGAATGGAACTGGAGTTTTTTTATCAGGTGACGAAGCTTCTCTTGCTCAACAA
ATTTTTGAAGAAAATAAACACAATGGACTTGTAAGTGACAAAATAGCACGTGATCGAAGT
TTACCTGATACTCGACCACCAGAATGCATGACACGAACTTATTTGAGTGATTTGCCAAAA
GTTTCAATTATTATTCCATTTCATAATGAAATTTTAAGCACTTTAACTCGAACTGTTCAC
AGTGTTTTTAATCGATCGCCACCTGAATTGCTAAAGGAAGTGATTTTGGTCAATGATCAT
AGTGACAAAGAACATTGTTATGGTGAACTTGAGGAATACATTGCAACACATTTTGATATC
AATAAAGTAAGAATTTTAGTGCTGACAAAGAGATCGGGATTGATGTGGGCGAGATTAGCT
GGTGCTCGTGCTGCGAGTGGTGATGTGTTGATTTTTATGGATTGTCACACTGAAGCTAAT
ATCAATTGGTTACCACCACTTATAGAACCAATTGCTTTGAATTATCGTACTTGTGTTTGT
CCTTACATTGATGTCATAAATGCAAAAGATTATCACTACACAGGTCTTCAACATGGAACT
CGAGGAGTTTTCAACTGGCAATTGATTTATCAATTTTTACCACTTCGACCTGAAGATCAA
TCTGACCCAACTGAACCTTTCAAATCACCCGTCATGATGGGTTGTGTTTTTGCAATTTCT
GCTAAATTTTTCTGGGAACTTGGTGGGTACGATCCAGCACTTGAGATTTGGGGCGGTGAG
CAGTATGAATTGAGTTTTAAGGTTTGGCTTTGTAACGGACAGCAACTTGATGCGCCATGT
TCACGAGTTGGTCATCTTTATCGGCCTCGACCATTCACAAATGCTGGAAATCATACAAAT
TATGTTTCATACAACTTTAAGCGTGTTGCAGAAGTTTGGATGGATGAATATGCTCAATAT
ATTTATAAACGTGATGAAAAGAAATGGAATGAAATTGATGTTGGTGATATTTCGCATATG
ATGAATCTTAAGAAAAAACTAAATTGCAAACCATTTAAATATTTTTTGGATGAAGTTGCT
CCTGATATGCTTGATCGATATCCTTATATTGAACCACCTTCATTTGCTAGTGGTGCTATT
CAATCAATAGCAAATCCACAATATTGTGTTGACACATTAGAAACTGAACGAGAAAAACAA
GTTGGAATTTATAGATGTCGTTCTAATCTTGTCAATCCAGGTTGGCATCAAGAATTTAGA
CTTCGAAATCATCGTGATATTTCAATTGAACATTCAAACAGTGACTGCCTTGATTTTAAT
AATAAAAGAATTCTTTATTACGCTTGTAAATTTAATCAAGAAAATCAATACTTTCGATAT
GATTTAAAAACTCAGCAAATTTATTGTGGATCAAAATGGCAAAATCAATGCATGGATATT
GATATGAGAACAAAATTACTAATTTATGCACCATGTGATGAAACTAAATTGACACAGAAA
TGGAAATGGGGATTTTTAAATGAAACAATGTTAAATGATTGGACAAATTATGGTAAACCA
ATCAATGATGAAAAGGAAATTGAAGATTTACTAAAAGAAGTTATAAATGATAAATAA
>g14846.t2 Gene=g14846 Length=600
MIFALTFAALYILITINNDPLLVDQPYIYIEPLASYYRFKHSPLKKDWHNYEFMDFEASR
VGPGENGTGVFLSGDEASLAQQIFEENKHNGLVSDKIARDRSLPDTRPPECMTRTYLSDL
PKVSIIIPFHNEILSTLTRTVHSVFNRSPPELLKEVILVNDHSDKEHCYGELEEYIATHF
DINKVRILVLTKRSGLMWARLAGARAASGDVLIFMDCHTEANINWLPPLIEPIALNYRTC
VCPYIDVINAKDYHYTGLQHGTRGVFNWQLIYQFLPLRPEDQSDPTEPFKSPVMMGCVFA
ISAKFFWELGGYDPALEIWGGEQYELSFKVWLCNGQQLDAPCSRVGHLYRPRPFTNAGNH
TNYVSYNFKRVAEVWMDEYAQYIYKRDEKKWNEIDVGDISHMMNLKKKLNCKPFKYFLDE
VAPDMLDRYPYIEPPSFASGAIQSIANPQYCVDTLETEREKQVGIYRCRSNLVNPGWHQE
FRLRNHRDISIEHSNSDCLDFNNKRILYYACKFNQENQYFRYDLKTQQIYCGSKWQNQCM
DIDMRTKLLIYAPCDETKLTQKWKWGFLNETMLNDWTNYGKPINDEKEIEDLLKEVINDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g14846.t2 | CDD | cd02510 | pp-GalNAc-T | 124 | 422 | 8.25847E-154 |
| 15 | g14846.t2 | CDD | cd00161 | RICIN | 440 | 565 | 7.82036E-11 |
| 9 | g14846.t2 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 43 | 432 | 2.0E-151 |
| 8 | g14846.t2 | Gene3D | G3DSA:2.80.10.50 | - | 433 | 579 | 2.8E-20 |
| 3 | g14846.t2 | PANTHER | PTHR11675:SF41 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 10 | 41 | 577 | 3.0E-151 |
| 4 | g14846.t2 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 41 | 577 | 3.0E-151 |
| 2 | g14846.t2 | Pfam | PF00535 | Glycosyl transferase family 2 | 124 | 309 | 4.2E-29 |
| 1 | g14846.t2 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 439 | 563 | 4.7E-17 |
| 11 | g14846.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 12 | g14846.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 13 | g14846.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 14 | - |
| 14 | g14846.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 18 | - |
| 10 | g14846.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 600 | - |
| 18 | g14846.t2 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 438 | 566 | 15.212 |
| 17 | g14846.t2 | SMART | SM00458 | ricin_3 | 439 | 566 | 3.9E-5 |
| 6 | g14846.t2 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 100 | 424 | 1.97E-56 |
| 5 | g14846.t2 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 432 | 565 | 4.78E-17 |
| 7 | g14846.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
