Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14847 g14847.t1 TSS g14847.t1 2652380 2652380
chr_4 g14847 g14847.t1 isoform g14847.t1 2652429 2654302
chr_4 g14847 g14847.t1 exon g14847.t1.exon1 2652429 2652564
chr_4 g14847 g14847.t1 cds g14847.t1.CDS1 2652429 2652564
chr_4 g14847 g14847.t1 exon g14847.t1.exon2 2652762 2652929
chr_4 g14847 g14847.t1 cds g14847.t1.CDS2 2652762 2652929
chr_4 g14847 g14847.t1 exon g14847.t1.exon3 2653992 2654302
chr_4 g14847 g14847.t1 cds g14847.t1.CDS3 2653992 2654302
chr_4 g14847 g14847.t1 TTS g14847.t1 2654325 2654325

Sequences

>g14847.t1 Gene=g14847 Length=615
ATGCCACAATACACGTTGACATATTTTGATATCGAGGCATTGGGCGAGCCTATTAGAATG
CTTTTGAGTTATGGCAAAATTCCATTCACCGATAATCGAATTGATTTTGAGAAAGATTGG
GCAAAATTTAAAGCTGCAATGCCAATGGGACAACTCCCAATTTTAGAGATCGATGGCAAA
GTTATGTACCAATCAATGGCAATTTCACGCTATTTGGCTAAACAAGTCGGTCTGAGTGGC
GCCAACGATTTGGAAAACTACGAAATTGACAATGCTGCAGACAACATTAATGATTTTAGA
GCAAAAATTGCATCTGCTGCATATGAATCACATGAAGAAGCCAAACAACACAAATACGAA
ATCCTTAAGAAGGAAACAATTCCATTTTTCCTCAATAAACTTGATAAAATTGCTGAAGAG
AACAATGGTCATTTTGCATTGAAGAAACTCACTTGGGCTGATTTGTATTTCACTGGATTG
ATCAACTACTTGAATTTCATTGCACAAGAAGATTTGCTTGCAAATCATTCAAATTTGCGA
AAAGTTGTGGAAAATACTCATGCTGCACCAGGAATTAAGGAATGGGTTGCAAAACGCCCA
AAATCAAATCGTTAA

>g14847.t1 Gene=g14847 Length=204
MPQYTLTYFDIEALGEPIRMLLSYGKIPFTDNRIDFEKDWAKFKAAMPMGQLPILEIDGK
VMYQSMAISRYLAKQVGLSGANDLENYEIDNAADNINDFRAKIASAAYESHEEAKQHKYE
ILKKETIPFFLNKLDKIAEENNGHFALKKLTWADLYFTGLINYLNFIAQEDLLANHSNLR
KVVENTHAAPGIKEWVAKRPKSNR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g14847.t1 CDD cd03039 GST_N_Sigma_like 4 74 0.000
11 g14847.t1 CDD cd03192 GST_C_Sigma_like 85 184 0.000
8 g14847.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 4 198 0.000
7 g14847.t1 Gene3D G3DSA:1.20.1050.10 - 77 188 0.000
3 g14847.t1 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 2 202 0.000
4 g14847.t1 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 2 202 0.000
1 g14847.t1 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 73 0.000
2 g14847.t1 Pfam PF14497 Glutathione S-transferase, C-terminal domain 97 199 0.000
10 g14847.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 80 28.174
9 g14847.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 82 204 16.131
13 g14847.t1 SFLD SFLDG01205 AMPS.1 1 202 0.000
14 g14847.t1 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 1 202 0.000
5 g14847.t1 SUPERFAMILY SSF52833 Thioredoxin-like 1 76 0.000
6 g14847.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 78 201 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values