Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14847 g14847.t2 TSS g14847.t2 2652380 2652380
chr_4 g14847 g14847.t2 isoform g14847.t2 2652429 2654302
chr_4 g14847 g14847.t2 exon g14847.t2.exon1 2652429 2652568
chr_4 g14847 g14847.t2 cds g14847.t2.CDS1 2652499 2652568
chr_4 g14847 g14847.t2 exon g14847.t2.exon2 2652762 2652929
chr_4 g14847 g14847.t2 cds g14847.t2.CDS2 2652762 2652929
chr_4 g14847 g14847.t2 exon g14847.t2.exon3 2653992 2654302
chr_4 g14847 g14847.t2 cds g14847.t2.CDS3 2653992 2654302
chr_4 g14847 g14847.t2 TTS g14847.t2 2654325 2654325

Sequences

>g14847.t2 Gene=g14847 Length=619
ATGCCACAATACACGTTGACATATTTTGATATCGAGGCATTGGGCGAGCCTATTAGAATG
CTTTTGAGTTATGGCAAAATTCCATTCACCGATAATCGAATTGATTTTGAGAAAGATTGG
GCAAAATTTAAAGCTGGTAACAATGCCAATGGGACAACTCCCAATTTTAGAGATCGATGG
CAAAGTTATGTACCAATCAATGGCAATTTCACGCTATTTGGCTAAACAAGTCGGTCTGAG
TGGCGCCAACGATTTGGAAAACTACGAAATTGACAATGCTGCAGACAACATTAATGATTT
TAGAGCAAAAATTGCATCTGCTGCATATGAATCACATGAAGAAGCCAAACAACACAAATA
CGAAATCCTTAAGAAGGAAACAATTCCATTTTTCCTCAATAAACTTGATAAAATTGCTGA
AGAGAACAATGGTCATTTTGCATTGAAGAAACTCACTTGGGCTGATTTGTATTTCACTGG
ATTGATCAACTACTTGAATTTCATTGCACAAGAAGATTTGCTTGCAAATCATTCAAATTT
GCGAAAAGTTGTGGAAAATACTCATGCTGCACCAGGAATTAAGGAATGGGTTGCAAAACG
CCCAAAATCAAATCGTTAA

>g14847.t2 Gene=g14847 Length=182
MAKFHSPIIELILRKIGQNLKLVTMPMGQLPILEIDGKVMYQSMAISRYLAKQVGLSGAN
DLENYEIDNAADNINDFRAKIASAAYESHEEAKQHKYEILKKETIPFFLNKLDKIAEENN
GHFALKKLTWADLYFTGLINYLNFIAQEDLLANHSNLRKVVENTHAAPGIKEWVAKRPKS
NR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g14847.t2 CDD cd03192 GST_C_Sigma_like 63 162 0.00000
8 g14847.t2 Gene3D G3DSA:3.40.30.10 Glutaredoxin 9 55 0.00000
7 g14847.t2 Gene3D G3DSA:1.20.1050.10 - 56 166 0.00000
3 g14847.t2 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 24 180 0.00000
4 g14847.t2 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 24 180 0.00000
1 g14847.t2 Pfam PF02798 Glutathione S-transferase, N-terminal domain 25 51 0.00005
2 g14847.t2 Pfam PF14497 Glutathione S-transferase, C-terminal domain 75 177 0.00000
10 g14847.t2 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 58 16.65000
9 g14847.t2 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 60 182 16.13100
12 g14847.t2 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 23 164 0.00000
5 g14847.t2 SUPERFAMILY SSF52833 Thioredoxin-like 22 55 0.00000
6 g14847.t2 SUPERFAMILY SSF47616 GST C-terminal domain-like 56 179 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed