Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutamine–fructose-6-phosphate aminotransferase [isomerizing] 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14878 g14878.t10 isoform g14878.t10 2801537 2810568
chr_4 g14878 g14878.t10 exon g14878.t10.exon1 2801537 2801543
chr_4 g14878 g14878.t10 cds g14878.t10.CDS1 2801537 2801543
chr_4 g14878 g14878.t10 exon g14878.t10.exon2 2806040 2806551
chr_4 g14878 g14878.t10 cds g14878.t10.CDS2 2806040 2806551
chr_4 g14878 g14878.t10 exon g14878.t10.exon3 2806615 2806756
chr_4 g14878 g14878.t10 cds g14878.t10.CDS3 2806615 2806756
chr_4 g14878 g14878.t10 exon g14878.t10.exon4 2810225 2810382
chr_4 g14878 g14878.t10 cds g14878.t10.CDS4 2810225 2810382
chr_4 g14878 g14878.t10 exon g14878.t10.exon5 2810565 2810568
chr_4 g14878 g14878.t10 cds g14878.t10.CDS5 2810565 2810567
chr_4 g14878 g14878.t10 TSS g14878.t10 NA NA
chr_4 g14878 g14878.t10 TTS g14878.t10 NA NA

Sequences

>g14878.t10 Gene=g14878 Length=823
ATGTGTGGTATTTTTGCATACTTGAACTATCTAACACCAAAAACTCGTCGTGAGGTTCTC
GAATATCTTGTAACCGGCTTGAAGCGTCTCGAGTATCGTGGCTATGATTCGGCTGGTGTT
GCTGTGGATAGCGAGGATGGAAAAGGCATCGTGTTAGTAAAGCAAACTGGCAAGGTTAAA
GCACTTGAGGAGGCCATCAATGAAAGCATGATTGGCCATGACATCGACAGTCCATTGATG
TCTCATTGCGGTATCTCACATACACGTTGGGCTACTCATGGTGAACCAAGTGAGCTCAAT
TCACATCCACAACGAAGTGATGAAGAAAATAGCTTTGTTGTTGTTCACAATGGAATTATC
ACCAATTATAAGGATGTTAAAACTTTCTTGGAAAAACGTGGCTATAAATTTGAGTCTGAA
ACTGATACTGAAATCATTGCAAAACTTGTTCATCATTTATACATGCAACATCCAAATTAT
TCATTTAGAGAGTTGGTTGAACAAGTCATTCAGCAATTGGAAGGTGCATTTTCATTGGCC
TTCAAATCAAAACACTTTCCTGGTGAATGTGTCGCCACGCGACGTGGTTCACCACTCCTT
GTTGGAATAAAGACTAAAACACGTCTCGCAACTGATCATATTCCGATTTTGTATGGCAAA
GAACATCGTCCTCATGGCGCTAATCGTGAAGTTCCAATGATGCCAAGAACTGAAAGCACA
AGTGAATTTCAACCACTCGAAGATAAAGAAGTTGAATATTTCTTTGCATCTGATGCATCA
GCTGTTATTGAACATACAAATCGTGTCATCTATTTGGAAGACG

>g14878.t10 Gene=g14878 Length=274
MCGIFAYLNYLTPKTRREVLEYLVTGLKRLEYRGYDSAGVAVDSEDGKGIVLVKQTGKVK
ALEEAINESMIGHDIDSPLMSHCGISHTRWATHGEPSELNSHPQRSDEENSFVVVHNGII
TNYKDVKTFLEKRGYKFESETDTEIIAKLVHHLYMQHPNYSFRELVEQVIQQLEGAFSLA
FKSKHFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKEHRPHGANREVPMMPRTEST
SEFQPLEDKEVEYFFASDASAVIEHTNRVIYLED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g14878.t10 CDD cd00714 GFAT 2 274 0.000
2 g14878.t10 PANTHER PTHR10937:SF10 GLUTAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] 2 1 274 0.000
3 g14878.t10 PANTHER PTHR10937 GLUCOSAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING 1 274 0.000
1 g14878.t10 Pfam PF13522 Glutamine amidotransferase domain 81 201 0.000
5 g14878.t10 ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 2 274 39.251
4 g14878.t10 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 274 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed