General information for g14878.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glutamine–fructose-6-phosphate aminotransferase [isomerizing] 2.
Parent gene
- The parent gene g14878 is located on chr_4: 2811719..2812274 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14878 | g14878.t17 | isoform | g14878.t17 | 2806045 | 2812274 |
| chr_4 | g14878 | g14878.t17 | exon | g14878.t17.exon1 | 2806045 | 2806551 |
| chr_4 | g14878 | g14878.t17 | cds | g14878.t17.CDS1 | 2806240 | 2806551 |
| chr_4 | g14878 | g14878.t17 | exon | g14878.t17.exon2 | 2806615 | 2806756 |
| chr_4 | g14878 | g14878.t17 | cds | g14878.t17.CDS2 | 2806615 | 2806756 |
| chr_4 | g14878 | g14878.t17 | exon | g14878.t17.exon3 | 2810225 | 2810382 |
| chr_4 | g14878 | g14878.t17 | cds | g14878.t17.CDS3 | 2810225 | 2810382 |
| chr_4 | g14878 | g14878.t17 | exon | g14878.t17.exon4 | 2810565 | 2811404 |
| chr_4 | g14878 | g14878.t17 | cds | g14878.t17.CDS4 | 2810565 | 2811404 |
| chr_4 | g14878 | g14878.t17 | exon | g14878.t17.exon5 | 2811473 | 2811736 |
| chr_4 | g14878 | g14878.t17 | cds | g14878.t17.CDS5 | 2811473 | 2811736 |
| chr_4 | g14878 | g14878.t17 | exon | g14878.t17.exon6 | 2811799 | 2812274 |
| chr_4 | g14878 | g14878.t17 | cds | g14878.t17.CDS6 | 2811799 | 2811909 |
| chr_4 | g14878 | g14878.t17 | TSS | g14878.t17 | NA | NA |
| chr_4 | g14878 | g14878.t17 | TTS | g14878.t17 | NA | NA |
Sequences
>g14878.t17 Gene=g14878 Length=2387
TTTGCATACTTGAACTATCTAACACCAAAAACTCGTCGTGAGGTTCTCGAATATCTTGTA
ACCGGCTTGAAGCGTCTCGAGTATCGTGGCTATGATTCGGCTGGTGTTGCTGTGGATAGC
GAGGATGGAAAAGGCATCGTGTTAGTAAAGCAAACTGGCAAGGTTAAAGCACTTGAGGAG
GCCATCAATGAAAGCATGATTGGCCATGACATCGACAGTCCATTGATGTCTCATTGCGGT
ATCTCACATACACGTTGGGCTACTCATGGTGAACCAAGTGAGCTCAATTCACATCCACAA
CGAAGTGATGAAGAAAATAGCTTTGTTGTTGTTCACAATGGAATTATCACCAATTATAAG
GATGTTAAAACTTTCTTGGAAAAACGTGGCTATAAATTTGAGTCTGAAACTGATACTGAA
ATCATTGCAAAACTTGTTCATCATTTATACATGCAACATCCAAATTATTCATTTAGAGAG
TTGGTTGAACAAGTCATTCAGCAATTGGAAGGTGCATTTTCATTGGCCTTCAAATCAAAA
CACTTTCCTGGTGAATGTGTCGCCACGCGACGTGGTTCACCACTCCTTGTTGGAATAAAG
ACTAAAACACGTCTCGCAACTGATCATATTCCGATTTTGTATGGCAAAGAACATCGTCCT
CATGGCGCTAATCGTGAAGTTCCAATGATGCCAAGAACTGAAAGCACAAGTGAATTTCAA
CCACTCGAAGATAAAGAAGTTGAATATTTCTTTGCATCTGATGCATCAGCTGTTATTGAA
CATACAAATCGTGTCATCTATTTGGAAGACGATGACGTCGCAGCAGTCAAAGAAGGCGCT
CTCAGTATTCATCGCCTTAAAAAATCAATGGACGATTCACACGCTCGTGAAATTATCACA
TTAAAAATGGAAATTCAACAAATTATGAAAGGAAATTACGAATATTTCATGCAAAAGGAA
ATTTTCGAACAACCTGAATCAGTGGTCAATACAATGCGTGGTCGTGTAAATTTAAATGAT
AATACAGTAACACTTGGTGGAATTAAGGAATACATTCCAGAAATTAAGCGTTGTCGTCGT
CTTATGTTGATTGGTTGTGGAACATCATATCACAGTGCAGTTGCAACAAGACAATTACTT
GAAGAATTAACAGAATTGCCAGTTATGGTTGAACTTGCAAGTGATTTCTTAGATCGAAAC
ACACCAATTTTCCGTGATGACGTTTGTTTCTTTATTTCACAATCTGGTGAAACTGCCGAC
ACATTAATGGCATTGAGATATTGTAAACAACGTGGTGCATTGATTGTTGGTATCACCAAC
ACTGTCGGCAGTTCTATCTGTCGTGAATCACATTGTGGTGTGCATATTAATGCTGGACCT
GAAATTGGTGTTGCATCAACAAAAGCCTACACATCGCAATTCATTTCACTTGTTATGTTT
GGTCTTGTTATGAGTGAAGATCGAATTTCATTGCAAACAAGAAGACAAGAAATTTTAAAC
GGTTTAAAGAATTTGGATGCCCAAATTAAAGATGTATTGAAACTTGATTCACAAGTATTG
GATATTGTTAAAGATTTATATCAACAAAAGAGTTTGCTGATTATGGGACGTGGTTATAAT
TTTGCTACATGTATGGAAGGTGCTTTGAAAGTGAAAGAATTGACATACATGCATTGTGAA
GGAATCATGGCTGGTGAACTTAAACATGGACCACTTGCTCTTGTTGATGATATGATGCCA
ATTGTGATGATTGTTATGCGTGATGGAGTTTATAATAAGACAATCAATGCCATACAACAA
GTTAAAGCTAGAGGAGGTCAACCAATTGTCATTTGTGAAGAAAATGACAAGGAAACAATG
GTGTTTGCCCATAAAGTTCTTGAAGTGCCGAAAACTGTTGATTGCCTTCAAGGAATTTTG
ACTGTCATTCCAATGCAACTTCTTTCATACCACATTGCTGTCTTGCGTGGTTGCAATGTT
GATTGTCCAAGAAATCTCGCAAAATCTGTCACTGTGGAGTAAAAATTTCATTTCAAGTAT
TCTATATCGTCTTTTAAGGAATTTTCTCTTTTTTTAAATTTTTATTATTTTTAGTCAGAT
TTTTTTGTACTTATGAAAAATTTCGAGTTTTTAAAAGGGATTAAAAATGTCTTTTAAAAA
AATTAGGTAATTTTATTTTATGAAGATTTTTTTATTTACTTAATTTTTCCACTTCAATTC
AATTGAAATCATTTTTTATTATTTGAATATTTCTGAAAACATTTAAACATTTAGCATTTT
TATTTCTTATACGTAAATAAGTAAGAAAAATAAATAAAAATCGATATTATTAAACTTTGT
AAAAATTTGTTTTATTTTAAAGAAAAATTAAAATTTTTAATTTTTTT
>g14878.t17 Gene=g14878 Length=608
MIGHDIDSPLMSHCGISHTRWATHGEPSELNSHPQRSDEENSFVVVHNGIITNYKDVKTF
LEKRGYKFESETDTEIIAKLVHHLYMQHPNYSFRELVEQVIQQLEGAFSLAFKSKHFPGE
CVATRRGSPLLVGIKTKTRLATDHIPILYGKEHRPHGANREVPMMPRTESTSEFQPLEDK
EVEYFFASDASAVIEHTNRVIYLEDDDVAAVKEGALSIHRLKKSMDDSHAREIITLKMEI
QQIMKGNYEYFMQKEIFEQPESVVNTMRGRVNLNDNTVTLGGIKEYIPEIKRCRRLMLIG
CGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPIFRDDVCFFISQSGETADTLMAL
RYCKQRGALIVGITNTVGSSICRESHCGVHINAGPEIGVASTKAYTSQFISLVMFGLVMS
EDRISLQTRRQEILNGLKNLDAQIKDVLKLDSQVLDIVKDLYQQKSLLIMGRGYNFATCM
EGALKVKELTYMHCEGIMAGELKHGPLALVDDMMPIVMIVMRDGVYNKTINAIQQVKARG
GQPIVICEENDKETMVFAHKVLEVPKTVDCLQGILTVIPMQLLSYHIAVLRGCNVDCPRN
LAKSVTVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g14878.t17 | CDD | cd00714 | GFAT | 7 | 211 | 0.000 |
| 15 | g14878.t17 | CDD | cd05008 | SIS_GlmS_GlmD_1 | 295 | 420 | 0.000 |
| 14 | g14878.t17 | CDD | cd05009 | SIS_GlmS_GlmD_2 | 453 | 606 | 0.000 |
| 9 | g14878.t17 | Gene3D | G3DSA:3.40.50.10490 | - | 246 | 607 | 0.000 |
| 8 | g14878.t17 | Gene3D | G3DSA:3.40.50.10490 | - | 446 | 593 | 0.000 |
| 4 | g14878.t17 | PANTHER | PTHR10937:SF10 | GLUTAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] 2 | 5 | 608 | 0.000 |
| 5 | g14878.t17 | PANTHER | PTHR10937 | GLUCOSAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING | 5 | 608 | 0.000 |
| 3 | g14878.t17 | Pfam | PF13522 | Glutamine amidotransferase domain | 12 | 122 | 0.000 |
| 2 | g14878.t17 | Pfam | PF01380 | SIS domain | 290 | 415 | 0.000 |
| 1 | g14878.t17 | Pfam | PF01380 | SIS domain | 461 | 590 | 0.000 |
| 13 | g14878.t17 | ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 1 | 214 | 30.104 |
| 11 | g14878.t17 | ProSiteProfiles | PS51464 | SIS domain profile. | 286 | 425 | 27.808 |
| 12 | g14878.t17 | ProSiteProfiles | PS51464 | SIS domain profile. | 457 | 598 | 24.430 |
| 6 | g14878.t17 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 8 | 220 | 0.000 |
| 7 | g14878.t17 | SUPERFAMILY | SSF53697 | SIS domain | 245 | 608 | 0.000 |
| 10 | g14878.t17 | TIGRFAM | TIGR01135 | glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) | 182 | 608 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1901135 | carbohydrate derivative metabolic process | BP |
| GO:0097367 | carbohydrate derivative binding | MF |
| GO:1901137 | carbohydrate derivative biosynthetic process | BP |
| GO:0004360 | glutamine-fructose-6-phosphate transaminase (isomerizing) activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00820 (glutamine—fructose-6-phosphate transaminase (isomerizing))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed