General information for g14878.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glutamine–fructose-6-phosphate aminotransferase [isomerizing] 2.
Parent gene
- The parent gene g14878 is located on chr_4: 2811719..2812274 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14878 | g14878.t20 | isoform | g14878.t20 | 2809443 | 2811019 |
| chr_4 | g14878 | g14878.t20 | exon | g14878.t20.exon1 | 2809443 | 2811019 |
| chr_4 | g14878 | g14878.t20 | cds | g14878.t20.CDS1 | 2810625 | 2811017 |
| chr_4 | g14878 | g14878.t20 | TSS | g14878.t20 | NA | NA |
| chr_4 | g14878 | g14878.t20 | TTS | g14878.t20 | NA | NA |
Sequences
>g14878.t20 Gene=g14878 Length=1577
TTATTGTAATTTGAAAATTTTATTGTTAATCAAATGCATGTCTCTTACAAATAATTGAAT
AACAGACTTTTTATTTTGTTTTTTTTTTACTTCAAAAAATAAAAATTAATCATTTACTCA
TAAATTTTTTAAGTAATTTAATTAGAAAAATATTTTTAGTATGTTTTCTCGTGTGTTTGT
ATTTATTTGGTGTTTTTTTTAAAATTTAGTTTAAGCAAAATTAATATTAATATTTTTTAA
TGCATGTTTTATATTTTTATACTAATTGGCATAAAGTAGATGACATGTTTTTTAATGGTT
AGTATTGTTTTCATGTCTTTTAGAATTTCTTTTTTTTTGTAGTTTTGTTTAAATGGTGGT
GGAAAATAAAATTCTTTCAAGATTGAAGAGAAAAATTGAGCTCAAAAACTTATTTAGAAT
TTAATTAATTTTCTATGTAAAAAATAAAATTGAAGAAAGTGATAAAACACAAAATTTTTC
GAATTCAAGGATGAGACACTTAAAATATTTATAATTATAAAAAATCACTGCAATTAGCTA
TAAAAATTTTGATATTCAAAAGATTTATTTAATATAAAAGTTGAAATAATTTTTTTACAC
GACATATTAAAACTTAATTGTTTTCACTTTTTAATAAAATTAATTATAAAAGCTACTTTT
GACTAAAAACACAAAGTTTTATTGATAAAAGTTTAAAGAGCTCAATTTTGCTTCAATCTC
TTCAATATTATAATATTTTAAAAAATTTCAACTTTTAATTCTGAAATAAAAATTTTCTAC
AGAACATCGTCCTCATGGCGCTAATCGTGAAGTTCCAATGATGCCAAGAACTGAAAGCAC
AAGTGAATTTCAACCACTCGAAGATAAAGAAGTTGAATATTTCTTTGCATCTGATGCATC
AGCTGTTATTGAACATACAAATCGTGTCATCTATTTGGAAGTTTGTATAAATTATTTTAT
TGAAATTTTTTATTTCAAAAATTTAACTATAATTTTTTAAAAATATTTTGCTATAATATC
TTTCAAAAATTTTTTTCCTATAGTTACTTTGCTATAATTTTTTAACTCCGCAATAGTTTG
TGCTTTATTAAATAAACTCCGCAATTTTTTTAATTTCTTTAGGACGATGACGTCGCAGCA
GTCAAAGAAGGCGCTCTCAGTATTCATCGCCTTAAAAAATCAATGGACGATTCACACGCT
CGTGAAATTATCACATTAAAAATGGAAATTCAACAAATTATGAAAGGAAATTACGAATAT
TTCATGCAAAAGGAAATTTTCGAACAACCTGAATCAGTGGTCAATACAATGCGTGGTCGT
GTAAATTTAAATGATAATACAGTAACACTTGGTGGAATTAAGGAATACATTCCAGAAATT
AAGCGTTGTCGTCGTCTTATGTTGATTGGTTGTGGAACATCATATCACAGTGCAGTTGCA
ACAAGACAATTACTTGAAGAATTAACAGAATTGCCAGTTATGGTTGAACTTGCAAGTGAT
TTCTTAGATCGAAACACACCAATTTTCCGTGATGACGTTTGTTTCTTTATTTCACAATCT
GGTGAAACTGCCGACAC
>g14878.t20 Gene=g14878 Length=131
MDDSHAREIITLKMEIQQIMKGNYEYFMQKEIFEQPESVVNTMRGRVNLNDNTVTLGGIK
EYIPEIKRCRRLMLIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPIFRDDVC
FFISQSGETAD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14878.t20 | CDD | cd05008 | SIS_GlmS_GlmD_1 | 71 | 131 | 0.000 |
| 5 | g14878.t20 | Gene3D | G3DSA:3.40.50.10490 | - | 11 | 131 | 0.000 |
| 2 | g14878.t20 | PANTHER | PTHR10937:SF10 | GLUTAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] 2 | 3 | 131 | 0.000 |
| 3 | g14878.t20 | PANTHER | PTHR10937 | GLUCOSAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING | 3 | 131 | 0.000 |
| 1 | g14878.t20 | Pfam | PF01380 | SIS domain | 66 | 131 | 0.000 |
| 6 | g14878.t20 | ProSiteProfiles | PS51464 | SIS domain profile. | 62 | 131 | 15.031 |
| 4 | g14878.t20 | SUPERFAMILY | SSF53697 | SIS domain | 6 | 131 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1901135 | carbohydrate derivative metabolic process | BP |
| GO:0097367 | carbohydrate derivative binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
