General information for g14878.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glutamine–fructose-6-phosphate aminotransferase [isomerizing] 2.
Parent gene
- The parent gene g14878 is located on chr_4: 2811719..2812274 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14878 | g14878.t23 | TSS | g14878.t23 | 2810498 | 2810498 |
| chr_4 | g14878 | g14878.t23 | isoform | g14878.t23 | 2810563 | 2811494 |
| chr_4 | g14878 | g14878.t23 | exon | g14878.t23.exon1 | 2810563 | 2811404 |
| chr_4 | g14878 | g14878.t23 | cds | g14878.t23.CDS1 | 2810625 | 2811404 |
| chr_4 | g14878 | g14878.t23 | exon | g14878.t23.exon2 | 2811473 | 2811494 |
| chr_4 | g14878 | g14878.t23 | cds | g14878.t23.CDS2 | 2811473 | 2811493 |
| chr_4 | g14878 | g14878.t23 | TTS | g14878.t23 | 2812226 | 2812226 |
Sequences
>g14878.t23 Gene=g14878 Length=864
AGGACGATGACGTCGCAGCAGTCAAAGAAGGCGCTCTCAGTATTCATCGCCTTAAAAAAT
CAATGGACGATTCACACGCTCGTGAAATTATCACATTAAAAATGGAAATTCAACAAATTA
TGAAAGGAAATTACGAATATTTCATGCAAAAGGAAATTTTCGAACAACCTGAATCAGTGG
TCAATACAATGCGTGGTCGTGTAAATTTAAATGATAATACAGTAACACTTGGTGGAATTA
AGGAATACATTCCAGAAATTAAGCGTTGTCGTCGTCTTATGTTGATTGGTTGTGGAACAT
CATATCACAGTGCAGTTGCAACAAGACAATTACTTGAAGAATTAACAGAATTGCCAGTTA
TGGTTGAACTTGCAAGTGATTTCTTAGATCGAAACACACCAATTTTCCGTGATGACGTTT
GTTTCTTTATTTCACAATCTGGTGAAACTGCCGACACATTAATGGCATTGAGATATTGTA
AACAACGTGGTGCATTGATTGTTGGTATCACCAACACTGTCGGCAGTTCTATCTGTCGTG
AATCACATTGTGGTGTGCATATTAATGCTGGACCTGAAATTGGTGTTGCATCAACAAAAG
CCTACACATCGCAATTCATTTCACTTGTTATGTTTGGTCTTGTTATGAGTGAAGATCGAA
TTTCATTGCAAACAAGAAGACAAGAAATTTTAAACGGTTTAAAGAATTTGGATGCCCAAA
TTAAAGATGTATTGAAACTTGATTCACAAGTATTGGATATTGTTAAAGATTTATATCAAC
AAAAGAGTTTGCTGATTATGGGACGTGGTTATAATTTTGCTACATGTATGGAAGGTGCTT
TGAAAGTGAAAGAATTGACATACA
>g14878.t23 Gene=g14878 Length=267
MDDSHAREIITLKMEIQQIMKGNYEYFMQKEIFEQPESVVNTMRGRVNLNDNTVTLGGIK
EYIPEIKRCRRLMLIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPIFRDDVC
FFISQSGETADTLMALRYCKQRGALIVGITNTVGSSICRESHCGVHINAGPEIGVASTKA
YTSQFISLVMFGLVMSEDRISLQTRRQEILNGLKNLDAQIKDVLKLDSQVLDIVKDLYQQ
KSLLIMGRGYNFATCMEGALKVKELTY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g14878.t23 | CDD | cd05008 | SIS_GlmS_GlmD_1 | 71 | 196 | 0.000 |
| 6 | g14878.t23 | Gene3D | G3DSA:3.40.50.10490 | - | 12 | 229 | 0.000 |
| 5 | g14878.t23 | Gene3D | G3DSA:3.40.50.10490 | - | 230 | 267 | 0.000 |
| 2 | g14878.t23 | PANTHER | PTHR10937:SF10 | GLUTAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] 2 | 3 | 267 | 0.000 |
| 3 | g14878.t23 | PANTHER | PTHR10937 | GLUCOSAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING | 3 | 267 | 0.000 |
| 1 | g14878.t23 | Pfam | PF01380 | SIS domain | 66 | 191 | 0.000 |
| 8 | g14878.t23 | ProSiteProfiles | PS51464 | SIS domain profile. | 62 | 201 | 27.808 |
| 7 | g14878.t23 | ProSiteProfiles | PS51464 | SIS domain profile. | 233 | 267 | 8.363 |
| 4 | g14878.t23 | SUPERFAMILY | SSF53697 | SIS domain | 21 | 267 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1901135 | carbohydrate derivative metabolic process | BP |
| GO:0097367 | carbohydrate derivative binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed