General information for g14878.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glutamine–fructose-6-phosphate aminotransferase [isomerizing] 1.
Parent gene
- The parent gene g14878 is located on chr_4: 2811719..2812274 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14878 | g14878.t4 | isoform | g14878.t4 | 2801537 | 2806550 |
| chr_4 | g14878 | g14878.t4 | exon | g14878.t4.exon1 | 2801537 | 2801543 |
| chr_4 | g14878 | g14878.t4 | cds | g14878.t4.CDS1 | 2801537 | 2801543 |
| chr_4 | g14878 | g14878.t4 | exon | g14878.t4.exon2 | 2806040 | 2806550 |
| chr_4 | g14878 | g14878.t4 | cds | g14878.t4.CDS2 | 2806040 | 2806548 |
| chr_4 | g14878 | g14878.t4 | TSS | g14878.t4 | NA | NA |
| chr_4 | g14878 | g14878.t4 | TTS | g14878.t4 | NA | NA |
Sequences
>g14878.t4 Gene=g14878 Length=518
ATGTGTGGTATTTTTGCATACTTGAACTATCTAACACCAAAAACTCGTCGTGAGGTTCTC
GAATATCTTGTAACCGGCTTGAAGCGTCTCGAGTATCGTGGCTATGATTCGGCTGGTGTT
GCTGTGGATAGCGAGGATGGAAAAGGCATCGTGTTAGTAAAGCAAACTGGCAAGGTTAAA
GCACTTGAGGAGGCCATCAATGAAAGCATGATTGGCCATGACATCGACAGTCCATTGATG
TCTCATTGCGGTATCTCACATACACGTTGGGCTACTCATGGTGAACCAAGTGAGCTCAAT
TCACATCCACAACGAAGTGATGAAGAAAATAGCTTTGTTGTTGTTCACAATGGAATTATC
ACCAATTATAAGGATGTTAAAACTTTCTTGGAAAAACGTGGCTATAAATTTGAGTCTGAA
ACTGATACTGAAATCATTGCAAAACTTGTTCATCATTTATACATGCAACATCCAAATTAT
TCATTTAGAGAGTTGGTTGAACAAGTCATTCAGCAATT
>g14878.t4 Gene=g14878 Length=172
MCGIFAYLNYLTPKTRREVLEYLVTGLKRLEYRGYDSAGVAVDSEDGKGIVLVKQTGKVK
ALEEAINESMIGHDIDSPLMSHCGISHTRWATHGEPSELNSHPQRSDEENSFVVVHNGII
TNYKDVKTFLEKRGYKFESETDTEIIAKLVHHLYMQHPNYSFRELVEQVIQQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14878.t4 | CDD | cd00714 | GFAT | 2 | 172 | 0.00 |
| 5 | g14878.t4 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 2 | 172 | 0.00 |
| 2 | g14878.t4 | PANTHER | PTHR10937 | GLUCOSAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING | 1 | 172 | 0.00 |
| 3 | g14878.t4 | PANTHER | PTHR10937:SF12 | GLUTAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] 1 | 1 | 172 | 0.00 |
| 1 | g14878.t4 | Pfam | PF13522 | Glutamine amidotransferase domain | 81 | 153 | 0.00 |
| 6 | g14878.t4 | ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 2 | 172 | 33.36 |
| 4 | g14878.t4 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 2 | 170 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
