Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutamine–fructose-6-phosphate aminotransferase [isomerizing] 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14878 g14878.t8 isoform g14878.t8 2801537 2810379
chr_4 g14878 g14878.t8 exon g14878.t8.exon1 2801537 2801543
chr_4 g14878 g14878.t8 cds g14878.t8.CDS1 2801537 2801543
chr_4 g14878 g14878.t8 exon g14878.t8.exon2 2806040 2806551
chr_4 g14878 g14878.t8 cds g14878.t8.CDS2 2806040 2806551
chr_4 g14878 g14878.t8 exon g14878.t8.exon3 2806615 2806756
chr_4 g14878 g14878.t8 cds g14878.t8.CDS3 2806615 2806756
chr_4 g14878 g14878.t8 exon g14878.t8.exon4 2810225 2810379
chr_4 g14878 g14878.t8 cds g14878.t8.CDS4 2810225 2810379
chr_4 g14878 g14878.t8 TSS g14878.t8 NA NA
chr_4 g14878 g14878.t8 TTS g14878.t8 NA NA

Sequences

>g14878.t8 Gene=g14878 Length=816
ATGTGTGGTATTTTTGCATACTTGAACTATCTAACACCAAAAACTCGTCGTGAGGTTCTC
GAATATCTTGTAACCGGCTTGAAGCGTCTCGAGTATCGTGGCTATGATTCGGCTGGTGTT
GCTGTGGATAGCGAGGATGGAAAAGGCATCGTGTTAGTAAAGCAAACTGGCAAGGTTAAA
GCACTTGAGGAGGCCATCAATGAAAGCATGATTGGCCATGACATCGACAGTCCATTGATG
TCTCATTGCGGTATCTCACATACACGTTGGGCTACTCATGGTGAACCAAGTGAGCTCAAT
TCACATCCACAACGAAGTGATGAAGAAAATAGCTTTGTTGTTGTTCACAATGGAATTATC
ACCAATTATAAGGATGTTAAAACTTTCTTGGAAAAACGTGGCTATAAATTTGAGTCTGAA
ACTGATACTGAAATCATTGCAAAACTTGTTCATCATTTATACATGCAACATCCAAATTAT
TCATTTAGAGAGTTGGTTGAACAAGTCATTCAGCAATTGGAAGGTGCATTTTCATTGGCC
TTCAAATCAAAACACTTTCCTGGTGAATGTGTCGCCACGCGACGTGGTTCACCACTCCTT
GTTGGAATAAAGACTAAAACACGTCTCGCAACTGATCATATTCCGATTTTGTATGGCAAA
GAACATCGTCCTCATGGCGCTAATCGTGAAGTTCCAATGATGCCAAGAACTGAAAGCACA
AGTGAATTTCAACCACTCGAAGATAAAGAAGTTGAATATTTCTTTGCATCTGATGCATCA
GCTGTTATTGAACATACAAATCGTGTCATCTATTTG

>g14878.t8 Gene=g14878 Length=272
MCGIFAYLNYLTPKTRREVLEYLVTGLKRLEYRGYDSAGVAVDSEDGKGIVLVKQTGKVK
ALEEAINESMIGHDIDSPLMSHCGISHTRWATHGEPSELNSHPQRSDEENSFVVVHNGII
TNYKDVKTFLEKRGYKFESETDTEIIAKLVHHLYMQHPNYSFRELVEQVIQQLEGAFSLA
FKSKHFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKEHRPHGANREVPMMPRTEST
SEFQPLEDKEVEYFFASDASAVIEHTNRVIYL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g14878.t8 CDD cd00714 GFAT 2 272 0.000
2 g14878.t8 PANTHER PTHR10937:SF10 GLUTAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] 2 1 272 0.000
3 g14878.t8 PANTHER PTHR10937 GLUCOSAMINE–FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING 1 272 0.000
1 g14878.t8 Pfam PF13522 Glutamine amidotransferase domain 81 201 0.000
5 g14878.t8 ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 2 272 38.922
4 g14878.t8 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 271 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed