General information for g1489.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1489 is located on chr_3: 11361520..11363773 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1489 | g1489.t1 | isoform | g1489.t1 | 11361520 | 11363773 |
| chr_3 | g1489 | g1489.t1 | exon | g1489.t1.exon1 | 11361520 | 11362034 |
| chr_3 | g1489 | g1489.t1 | cds | g1489.t1.CDS1 | 11361520 | 11362034 |
| chr_3 | g1489 | g1489.t1 | exon | g1489.t1.exon2 | 11362088 | 11362372 |
| chr_3 | g1489 | g1489.t1 | cds | g1489.t1.CDS2 | 11362088 | 11362372 |
| chr_3 | g1489 | g1489.t1 | exon | g1489.t1.exon3 | 11362871 | 11363221 |
| chr_3 | g1489 | g1489.t1 | cds | g1489.t1.CDS3 | 11362871 | 11363221 |
| chr_3 | g1489 | g1489.t1 | exon | g1489.t1.exon4 | 11363278 | 11363773 |
| chr_3 | g1489 | g1489.t1 | cds | g1489.t1.CDS4 | 11363278 | 11363773 |
| chr_3 | g1489 | g1489.t1 | TSS | g1489.t1 | NA | NA |
| chr_3 | g1489 | g1489.t1 | TTS | g1489.t1 | NA | NA |
Sequences
>g1489.t1 Gene=g1489 Length=1647
ATGTTAAACTTTTCAATTACAACTGATGACTTTCTTGACATTATTAATGAATTTAAAACA
CGTGCTTCACCATTTTATTTTGTTATTGGTTTTAATCAAGCATTTAGCAGTTTTTCATTT
GTTTCCAATATCATAACTGAGAAAAATTTATGCAAAAATTACAATCTTGCACCATCAATT
GATGTTTTTAATACAAACTTAACTGCAGATGATTTCAATTATCAACACTATAATGACATA
AAAGAATGTTTGTTTCAAAATTTTACGATTATTTCTCTACAAAGATCATTGACATCGAAA
ACTTTTTTAACAACTCGAATGTTAACATATGAAGCTCAACGTAAAGAGACAATAAGTTCA
ACTAAAGGAGGTTCTATGTTCTTTCACGATCCTTATGAATTACATACTAAATTTTCACAA
AATTATGTCATCAATGAACATCAAAATGTTGAAATTATCATTGAACCACAAATTATGGAA
GTTGATGAATCACTTTATGATGAAAATCCAATTAGTCGTAATTGTTATTTTGATGATGAA
CGTAAGTTAAAATTATTCAAAGTTTACACGAAAGCAAATTGTCAATTTGAATGCATGTCA
GAGTTGATGATCACGCGATGTGGTTGCGTTGAATTCTTTATGATTCGAAATAAAACGACA
AGAATTTGTTCAGCAAGTGAGAAAGTTTGTTTTGATAAAGTTCGAAAAGAATTTGATGGG
TATTTGAGTAATTGTGGATGTTTGGAAAGATGCAATTTTGTCAAATATAATATCGAATTT
AATTCACACGATAGAAATTTAAAAGATTTGCATAGTGGTTATGGTGATGGAATGTTGTAT
ACAGACAGCCTCATAAAATATAAAAGTATTTTCATCAACAAATTCCTCAGAAAGAAGCAA
TTTAATGAAATTGATTTTCTTTCATTTGTTGGAGGTTTACTTGGACTTTTTGCAGGATTT
TCAGTTTTATCAACAGTTGAAATATTTTTTTGGTTGTTCAAGAAGATTTTTGGAAGCAAA
TCAAATGTTGTTCAACCATTGAGTGAAAGTCAAAAAGACTTTTTAAATAAATTTAACACT
CTTGGTGATTTTCTGAATAATTCTTCAATTCATGGAGTCAATTACCTCACTCAGAGCAAT
TTCAAATACAAATTATTCTGGACATTTTTCATCACAATTTCACTAACTTTATGTGCATTT
ATGATCAAAAACATTCAAAAACAAACCTGGACCAAATCTTATGATGACAATTACAATTTC
AAAGATAAAGTTTTATTTCCTGCAGTAACTTTTATTCCAAGTTATTATGCAGATTTAAAA
TTACATAAATTAGTGACTGATCAAAAGAAAAGAATTAAAAATATTAAATTTTTACAAGAA
ACATTCAATGAAAACATCACAAAACAATTTGAATGCATTCATTTGATTCAGGACAAATAT
TTTCGTGATGATAAAAGTAGAAAACCATTGAACTTGGAATTCATTCGTTTGCATTCAAAA
GTGGATTATTTTAAACAACAATTTGCAACATGGAATGACAAATTTCAAGTAAATTTCACA
GAAATAAGAACAATTTATGGACTTGGATTTTCTTTTAATCTTTTAGATTCAAAGAAACTT
TTGCATTATAAAGAGTTTGTATTTTAA
>g1489.t1 Gene=g1489 Length=548
MLNFSITTDDFLDIINEFKTRASPFYFVIGFNQAFSSFSFVSNIITEKNLCKNYNLAPSI
DVFNTNLTADDFNYQHYNDIKECLFQNFTIISLQRSLTSKTFLTTRMLTYEAQRKETISS
TKGGSMFFHDPYELHTKFSQNYVINEHQNVEIIIEPQIMEVDESLYDENPISRNCYFDDE
RKLKLFKVYTKANCQFECMSELMITRCGCVEFFMIRNKTTRICSASEKVCFDKVRKEFDG
YLSNCGCLERCNFVKYNIEFNSHDRNLKDLHSGYGDGMLYTDSLIKYKSIFINKFLRKKQ
FNEIDFLSFVGGLLGLFAGFSVLSTVEIFFWLFKKIFGSKSNVVQPLSESQKDFLNKFNT
LGDFLNNSSIHGVNYLTQSNFKYKLFWTFFITISLTLCAFMIKNIQKQTWTKSYDDNYNF
KDKVLFPAVTFIPSYYADLKLHKLVTDQKKRIKNIKFLQETFNENITKQFECIHLIQDKY
FRDDKSRKPLNLEFIRLHSKVDYFKQQFATWNDKFQVNFTEIRTIYGLGFSFNLLDSKKL
LHYKEFVF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g1489.t1 | Gene3D | G3DSA:1.10.3590.10 | - | 112 | 123 | 2.0E-22 |
| 10 | g1489.t1 | Gene3D | G3DSA:2.60.470.10 | - | 124 | 299 | 2.0E-22 |
| 12 | g1489.t1 | Gene3D | G3DSA:1.10.287.820 | - | 167 | 251 | 2.0E-22 |
| 13 | g1489.t1 | Gene3D | G3DSA:1.10.287.770 | - | 300 | 329 | 2.0E-22 |
| 4 | g1489.t1 | PANTHER | PTHR11690:SF222 | ACID-SENSING ION CHANNEL 5 | 43 | 345 | 1.0E-31 |
| 6 | g1489.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 43 | 345 | 1.0E-31 |
| 3 | g1489.t1 | PANTHER | PTHR11690:SF222 | ACID-SENSING ION CHANNEL 5 | 360 | 538 | 1.0E-31 |
| 5 | g1489.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 360 | 538 | 1.0E-31 |
| 2 | g1489.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 42 | 329 | 6.3E-34 |
| 1 | g1489.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 364 | 533 | 1.5E-11 |
| 17 | g1489.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 24 | - |
| 20 | g1489.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 25 | 45 | - |
| 15 | g1489.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 46 | 305 | - |
| 19 | g1489.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 306 | 333 | - |
| 16 | g1489.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 334 | 384 | - |
| 18 | g1489.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 385 | 402 | - |
| 14 | g1489.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 403 | 548 | - |
| 8 | g1489.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 23 | 45 | - |
| 9 | g1489.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 306 | 328 | - |
| 7 | g1489.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 385 | 402 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed