General information for g14890.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Inositol monophosphatase 1.
Parent gene
- The parent gene g14890 is located on chr_4: 2854341..2855333 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14890 | g14890.t1 | TTS | g14890.t1 | 2854257 | 2854257 |
| chr_4 | g14890 | g14890.t1 | isoform | g14890.t1 | 2854341 | 2855333 |
| chr_4 | g14890 | g14890.t1 | exon | g14890.t1.exon1 | 2854341 | 2855043 |
| chr_4 | g14890 | g14890.t1 | cds | g14890.t1.CDS1 | 2854341 | 2855043 |
| chr_4 | g14890 | g14890.t1 | exon | g14890.t1.exon2 | 2855134 | 2855333 |
| chr_4 | g14890 | g14890.t1 | cds | g14890.t1.CDS2 | 2855134 | 2855333 |
| chr_4 | g14890 | g14890.t1 | TSS | g14890.t1 | 2855362 | 2855362 |
Sequences
>g14890.t1 Gene=g14890 Length=903
ATGAATTCGGAAGAATTAAAAGAATGTTTTGAGTATGTCAAAGATTTGATTCTAAAATGT
GGAGAAATTTTAAAAGAAGGTTTTAAAGATTGTGGTGAAGTGATGACAAAAGCAAATCCA
TCTGATGTTGTCACTATTTATGATCAAAAAATTGAAGAAATTTTAATTGGTGGAATTAGG
AAAAAATATCCTGACCATAAGTTTATAGCAGAAGAACAAGCTGCGAAATCAAAAGAAGCA
CAAGTCTTAACATCATTGCCAACATGGATTATTGATCCAATAGATGGATCTTTAAATTTT
GTTGCAAAAAGTCCACTTGTTTGCATTTCAGTCGCTCTGACTATCAATGAGGACTTAGTG
ATTGCTTTTCTTTACAACCCACTTACTAATGAATTTTTTTCTGCTCAGAAAGGTCTTGGA
GCATTTTTAAACGGTAACAAAATTAAAGTTAGAGAAACTGAAGTACTTCAAGGTTCAACA
ATTGCTACTGAAATAAATTTTGGAACATTTCCATTCGTTCGACCTCAAATGATGGCTAAA
TTAAATTTATTTTTTGAAAATCACATTAGGATTAGAACTTTAGGTTCAGCAGCATTAGAA
ATGGGATATTTGGCGAAAGGAACTTTCCAATTATTTTTATGTGAACGCTTGAAGCCTTGG
GATGTTGCTGCTGGGGCATTGATCATTTTAGAAGCTGGCGGTGTAGTGATTGATATAAAA
ACTGGAGAAGATTATAAAATTATGCAGCCAAATATAATTGCAGCTTCAAATATGAAAATA
GCATTGGAGCTCAAAAAAGCACTTGATGGAATTGATGCAAAATTGGAAGAAGAAGGAAAA
ACTCCGAAAATTTTATATGAAAAATTTATCGCTGCTGGAGGAAATATCAAGGATTTACGT
TAA
>g14890.t1 Gene=g14890 Length=300
MNSEELKECFEYVKDLILKCGEILKEGFKDCGEVMTKANPSDVVTIYDQKIEEILIGGIR
KKYPDHKFIAEEQAAKSKEAQVLTSLPTWIIDPIDGSLNFVAKSPLVCISVALTINEDLV
IAFLYNPLTNEFFSAQKGLGAFLNGNKIKVRETEVLQGSTIATEINFGTFPFVRPQMMAK
LNLFFENHIRIRTLGSAALEMGYLAKGTFQLFLCERLKPWDVAAGALIILEAGGVVIDIK
TGEDYKIMQPNIIAASNMKIALELKKALDGIDAKLEEEGKTPKILYEKFIAAGGNIKDLR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g14890.t1 | CDD | cd01639 | IMPase | 9 | 256 | 3.53066E-87 |
| 15 | g14890.t1 | Gene3D | G3DSA:3.30.540.10 | - | 2 | 148 | 1.0E-39 |
| 16 | g14890.t1 | Gene3D | G3DSA:3.40.190.80 | - | 151 | 279 | 5.6E-26 |
| 2 | g14890.t1 | PANTHER | PTHR20854:SF25 | INOSITOL-1-MONOPHOSPHATASE | 3 | 275 | 9.3E-86 |
| 3 | g14890.t1 | PANTHER | PTHR20854 | INOSITOL MONOPHOSPHATASE | 3 | 275 | 9.3E-86 |
| 5 | g14890.t1 | PRINTS | PR00378 | Lithium-sensitive myo-inositol monophosphatase family signature | 20 | 39 | 4.5E-9 |
| 9 | g14890.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 42 | 62 | 1.9E-38 |
| 8 | g14890.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 64 | 80 | 1.9E-38 |
| 7 | g14890.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 89 | 105 | 1.9E-38 |
| 10 | g14890.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 138 | 161 | 1.9E-38 |
| 4 | g14890.t1 | PRINTS | PR00378 | Lithium-sensitive myo-inositol monophosphatase family signature | 140 | 158 | 4.5E-9 |
| 12 | g14890.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 186 | 207 | 1.9E-38 |
| 11 | g14890.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 217 | 241 | 1.9E-38 |
| 6 | g14890.t1 | PRINTS | PR00378 | Lithium-sensitive myo-inositol monophosphatase family signature | 246 | 268 | 4.5E-9 |
| 1 | g14890.t1 | Pfam | PF00459 | Inositol monophosphatase family | 15 | 260 | 3.0E-58 |
| 14 | g14890.t1 | ProSitePatterns | PS00630 | Inositol monophosphatase family signature 2. | 220 | 234 | - |
| 13 | g14890.t1 | SUPERFAMILY | SSF56655 | Carbohydrate phosphatase | 6 | 268 | 4.32E-66 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046855 | inositol phosphate dephosphorylation | BP |
| GO:0008934 | inositol monophosphate 1-phosphatase activity | MF |
| GO:0046854 | phosphatidylinositol phosphate biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01092 (myo-inositol-1(or 4)-monophosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
