General information for g14890.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14890 is located on chr_4: 2854341..2855333 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14890 | g14890.t2 | isoform | g14890.t2 | 2854253 | 2855043 |
| chr_4 | g14890 | g14890.t2 | exon | g14890.t2.exon1 | 2854253 | 2855043 |
| chr_4 | g14890 | g14890.t2 | TTS | g14890.t2 | 2854257 | 2854257 |
| chr_4 | g14890 | g14890.t2 | cds | g14890.t2.CDS1 | 2854341 | 2854715 |
| chr_4 | g14890 | g14890.t2 | TSS | g14890.t2 | 2855362 | 2855362 |
Sequences
>g14890.t2 Gene=g14890 Length=791
GTTTATAGCAGAAGAACAAGCTGCGAAATCAAAAGAAGCACAAGTCTTAACATCATTGCC
AACATGGATTATTGATCCAATAGATGGATCTTTAAATTTTGTTGCAAAAAGTCCACTTGT
TTGCATTTCAGTCGCTCTGACTATCAATGAGGACTTAGTGATTGCTTTTCTTTACAACCC
ACTTACTAATGAATTTTTTTCTGCTCAGAAAGGTCTTGGAGCATTTTTAAACGGTAACAA
AATTAAAGTTAGAGAAACTGAAGTACTTCAAGGTTCAACAATTGCTACTGAAATAAATTT
TGGAACATTTCCATTCGTTCGACCTCAAATGATGGCTAAATTAAATTTATTTTTTGAAAA
TCACATTAGGATTAGAACTTTAGGTTCAGCAGCATTAGAAATGGGATATTTGGCGAAAGG
AACTTTCCAATTATTTTTATGTGAACGCTTGAAGCCTTGGGATGTTGCTGCTGGGGCATT
GATCATTTTAGAAGCTGGCGGTGTAGTGATTGATATAAAAACTGGAGAAGATTATAAAAT
TATGCAGCCAAATATAATTGCAGCTTCAAATATGAAAATAGCATTGGAGCTCAAAAAAGC
ACTTGATGGAATTGATGCAAAATTGGAAGAAGAAGGAAAAACTCCGAAAATTTTATATGA
AAAATTTATCGCTGCTGGAGGAAATATCAAGGATTTACGTTAACATTTTTAAGCTTCTGA
AAGAAAATTTCATTAAAAATTTAGAAGGGAGAATTGAATTGTTAATAAAAAAAAATACAC
TTAAATTTTAA
>g14890.t2 Gene=g14890 Length=124
MMAKLNLFFENHIRIRTLGSAALEMGYLAKGTFQLFLCERLKPWDVAAGALIILEAGGVV
IDIKTGEDYKIMQPNIIAASNMKIALELKKALDGIDAKLEEEGKTPKILYEKFIAAGGNI
KDLR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14890.t2 | Gene3D | G3DSA:3.40.190.80 | - | 1 | 104 | 1.6E-25 |
| 2 | g14890.t2 | PANTHER | PTHR20854:SF25 | INOSITOL-1-MONOPHOSPHATASE | 8 | 99 | 7.7E-20 |
| 3 | g14890.t2 | PANTHER | PTHR20854 | INOSITOL MONOPHOSPHATASE | 8 | 99 | 7.7E-20 |
| 4 | g14890.t2 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 10 | 31 | 8.7E-13 |
| 5 | g14890.t2 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 41 | 65 | 8.7E-13 |
| 1 | g14890.t2 | Pfam | PF00459 | Inositol monophosphatase family | 5 | 84 | 1.0E-16 |
| 7 | g14890.t2 | ProSitePatterns | PS00630 | Inositol monophosphatase family signature 2. | 44 | 58 | - |
| 6 | g14890.t2 | SUPERFAMILY | SSF56655 | Carbohydrate phosphatase | 10 | 92 | 4.97E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046855 | inositol phosphate dephosphorylation | BP |
| GO:0046854 | phosphatidylinositol phosphate biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
