General information for g14903.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative WD repeat-containing protein 82.
Parent gene
- The parent gene g14903 is located on chr_4: 2892889..2894014 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14903 | g14903.t1 | TSS | g14903.t1 | 2892720 | 2892720 |
| chr_4 | g14903 | g14903.t1 | isoform | g14903.t1 | 2892889 | 2894014 |
| chr_4 | g14903 | g14903.t1 | exon | g14903.t1.exon1 | 2892889 | 2893624 |
| chr_4 | g14903 | g14903.t1 | cds | g14903.t1.CDS1 | 2892889 | 2893624 |
| chr_4 | g14903 | g14903.t1 | exon | g14903.t1.exon2 | 2893761 | 2894014 |
| chr_4 | g14903 | g14903.t1 | cds | g14903.t1.CDS2 | 2893761 | 2894014 |
| chr_4 | g14903 | g14903.t1 | TTS | g14903.t1 | 2894245 | 2894245 |
Sequences
>g14903.t1 Gene=g14903 Length=990
ATGACAGAAGTTAATTGTTCACAAAACACCCATGATCGAATTCCACAAATTCAAGCTAGT
GATTTAAAAAAATTCCGAATTGCCTTCACAGTGCGTGAAATTGAAGAAATTTTCTCAGTT
GATTTCAGTCCAAGTGGAAAACTTTCTTTATTTAACACTGAATCTTGGATAAAAGTTTTT
GAACTACGTGATGATTCACCAAATAGTAAAGATGTAAAAGTTGATAGATATGGAGCAAAA
ATTTGTAAATTTGTAGATGAAAATAAATTTCTTCATACATCAATTAAAGACAACACAATT
AGATTAATGAACCATGAAAAAGGATGCTATGAATTTTATTTTTGTGGACATATTAAAGAA
GTTCATTCATTGTCAGTTTCAAAAAGTAACCCTAATCATTTTCTATCTGGTTCACGTGAT
ACATCTGTAAGATTTTGGGATACTAAAATTTCTAAACCACAAAATTTAATGACTTTCAAA
GGTTGTTCGTTTGTTGCCATGCATCCTACTCAAAGAGTTTTTGCTGTTGCTTATAAAAAT
GCAAATTCAATCTATTCAATTGAAGTTCATGACATGAAATTTGGTCTTTTAGAGACATTT
GATATTGAAGATTGTGGCTTCGAATGGTGTGACATGAGGTATTCGAATAATGGAAAAATG
ATGATGGTTAATACTTTGGATAGTTTAATTATGATTATTGATATGAAAAATGGTGAAGTT
ATTAATCGTTTAAGAGGGCTAAATAATCCTAACAAAATTCCATTTCAATCGTGCTTTACA
CCAGATTCAAGATATGTCATTGGAGGATCAGAAAATGGAGTCATCAATGTGTGGAATTTA
AAAACATCAGAAAAAGAATTTATGCTTAAAAATGAACAAGAGGAAATGTATCAAAAAATT
GAATTTAATCCAGAATTTATGTGTTTTGCAACTATTGGTAGTGCATTTAATTTATGGATT
GAAGATGACAAAAGTGAGGTCACAAAATGA
>g14903.t1 Gene=g14903 Length=329
MTEVNCSQNTHDRIPQIQASDLKKFRIAFTVREIEEIFSVDFSPSGKLSLFNTESWIKVF
ELRDDSPNSKDVKVDRYGAKICKFVDENKFLHTSIKDNTIRLMNHEKGCYEFYFCGHIKE
VHSLSVSKSNPNHFLSGSRDTSVRFWDTKISKPQNLMTFKGCSFVAMHPTQRVFAVAYKN
ANSIYSIEVHDMKFGLLETFDIEDCGFEWCDMRYSNNGKMMMVNTLDSLIMIIDMKNGEV
INRLRGLNNPNKIPFQSCFTPDSRYVIGGSENGVINVWNLKTSEKEFMLKNEQEEMYQKI
EFNPEFMCFATIGSAFNLWIEDDKSEVTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g14903.t1 | Gene3D | G3DSA:2.130.10.10 | - | 21 | 322 | 2.1E-33 |
| 3 | g14903.t1 | PANTHER | PTHR19861:SF0 | WD REPEAT-CONTAINING PROTEIN 82 | 18 | 324 | 2.6E-51 |
| 4 | g14903.t1 | PANTHER | PTHR19861 | WD40 REPEAT PROTEIN SWD2 | 18 | 324 | 2.6E-51 |
| 1 | g14903.t1 | Pfam | PF00400 | WD domain, G-beta repeat | 114 | 147 | 1.3E-4 |
| 2 | g14903.t1 | Pfam | PF00400 | WD domain, G-beta repeat | 258 | 279 | 0.27 |
| 9 | g14903.t1 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 266 | 280 | - |
| 12 | g14903.t1 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 156 | 10.733 |
| 14 | g14903.t1 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 147 | 11.244 |
| 11 | g14903.t1 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 212 | 288 | 9.098 |
| 13 | g14903.t1 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 288 | 9.874 |
| 6 | g14903.t1 | SMART | SM00320 | WD40_4 | 107 | 147 | 1.8E-5 |
| 7 | g14903.t1 | SMART | SM00320 | WD40_4 | 152 | 191 | 370.0 |
| 8 | g14903.t1 | SMART | SM00320 | WD40_4 | 237 | 279 | 1.4 |
| 5 | g14903.t1 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 314 | 1.17E-36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0048188 | Set1C/COMPASS complex | CC |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
