General information for g14916.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein pangolin, isoforms A/H/I/S.
Parent gene
- The parent gene g14916 is located on chr_4: 3003648..3021448 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14916 | g14916.t1 | isoform | g14916.t1 | 3003034 | 3021448 |
| chr_4 | g14916 | g14916.t1 | exon | g14916.t1.exon1 | 3003034 | 3003294 |
| chr_4 | g14916 | g14916.t1 | cds | g14916.t1.CDS1 | 3003034 | 3003294 |
| chr_4 | g14916 | g14916.t1 | exon | g14916.t1.exon2 | 3003508 | 3003648 |
| chr_4 | g14916 | g14916.t1 | cds | g14916.t1.CDS2 | 3003508 | 3003648 |
| chr_4 | g14916 | g14916.t1 | exon | g14916.t1.exon3 | 3021311 | 3021448 |
| chr_4 | g14916 | g14916.t1 | cds | g14916.t1.CDS3 | 3021311 | 3021448 |
| chr_4 | g14916 | g14916.t1 | TSS | g14916.t1 | NA | NA |
| chr_4 | g14916 | g14916.t1 | TTS | g14916.t1 | NA | NA |
Sequences
>g14916.t1 Gene=g14916 Length=540
ATGTCAACGGTTGCTGTAAGACATCATCATCCATCAGACGCCATTATTATCGTGCCATCG
GTCGCGAGTGGCGGCACTAGCGCCACCACTAAAATGCCACACACAAATCACACCACCGCT
GCGCCTTCATCGCCCGGTGATGACTTTGGCAGCACCGATGAGGTCAAAGTTTTCAAGGAC
GAAGGTGACAAAGAGGATGAACAGCAATCGGAAATTCTTTTAGAAGAAAAATCCAGCCTC
ATTGATCTCACCGAGAGTGAAGACAAAACAGAAAAACCACAACGAACAGATAGTCCGTTG
TATGGAAAATTTGACCCGCATCATCCTGGTTTTAATGTGAGCTACTTAGTGTCGCCATAT
TCATACGCAAATGGTGCTGCCGGTGCTTTACCTGCCGCAATGGCAAACAAAATAGGACTG
ACACCTTTCTTCTGCCCCAATGGTGATCATCATTTAACGACACCACCACCAGCACATTGT
GGCATTCCACCATATCAGATAGATCCAAAGACAATGGGTGAGTTTTTGAAAACAAAATAA
>g14916.t1 Gene=g14916 Length=179
MSTVAVRHHHPSDAIIIVPSVASGGTSATTKMPHTNHTTAAPSSPGDDFGSTDEVKVFKD
EGDKEDEQQSEILLEEKSSLIDLTESEDKTEKPQRTDSPLYGKFDPHHPGFNVSYLVSPY
SYANGAAGALPAAMANKIGLTPFFCPNGDHHLTTPPPAHCGIPPYQIDPKTMGEFLKTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14916.t1 | Gene3D | G3DSA:4.10.900.10 | - | 32 | 94 | 2.0E-6 |
| 5 | g14916.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 97 | - |
| 6 | g14916.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 46 | - |
| 4 | g14916.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 97 | - |
| 2 | g14916.t1 | PANTHER | PTHR10373 | TRANSCRIPTION FACTOR 7 FAMILY MEMBER | 47 | 173 | 3.2E-17 |
| 3 | g14916.t1 | PANTHER | PTHR10373:SF38 | PROTEIN PANGOLIN, ISOFORM J | 47 | 173 | 3.2E-17 |
| 1 | g14916.t1 | Pfam | PF08347 | N-terminal CTNNB1 binding | 36 | 96 | 1.2E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016055 | Wnt signaling pathway | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
