General information for g1492.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein maternal effect lethal 26.
Parent gene
- The parent gene g1492 is located on chr_3: 11374387..11375295 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1492 | g1492.t1 | TSS | g1492.t1 | 11374348 | 11374348 |
| chr_3 | g1492 | g1492.t1 | isoform | g1492.t1 | 11374387 | 11375295 |
| chr_3 | g1492 | g1492.t1 | exon | g1492.t1.exon1 | 11374387 | 11375295 |
| chr_3 | g1492 | g1492.t1 | cds | g1492.t1.CDS1 | 11374387 | 11375295 |
| chr_3 | g1492 | g1492.t1 | TTS | g1492.t1 | 11375482 | 11375482 |
Sequences
>g1492.t1 Gene=g1492 Length=909
ATGTCAAAAGAATTTGAATTTAAATTGCCTTCTATTACATTTTTAGATGAGGAAAGCGAA
ACAAAAGTATTTAATAATGAGTATGGAAATTGGACCATAAGTTTAAATTATAAAGTTAAT
TATCTATTTGGCACAATCGTTTACGAATCTATCTTTGACAAACATTTGATTGATACAAAG
CAAATCCAAGTAAACGTTCAAATATCAGAACCAAATTATAGAAATCTTTTTTCTTCTATA
GCTGCTAAAAATTGTGGTGGAACAACTTTCTTGTTTGAATATATGTCAAATAGTCATTAT
TCATATTTACGAACAAACTTTCAAATATCAGTAAAAGTTAAATTACCTGAAGTAAAATAC
AAACTAATCAATCACGAAGGTGCAAAAGGTCATTTAAAAAAATTATTTGAAACTGGAAAT
CATGCAGACATCACAATTCAATCAAATGGAAAAGAATTGAAAGTTCACAAGTTAATTTTG
ATGCGTTCTGAAGTTTTTGAAAAAATGTTGACTGGACCGACAAAAGAAGCTCAAAGTGGA
ATAATTGTTATCAAAGATTTTAAATTTGAAGTTATTGCAGAAATGTGCAGATATCTTTAT
TATGATGAAATTCCTAAAATTCAAACACTTGCTCTTCTTTTACTTATTGCAGCTGATAAA
TACATGGTTGAAGATTTGGCTGACAAATGTGAAAAATTTTTACTTAAAAATGTAAATAGC
GTAAATTTCCATGATATTTTGATAACTGCTGATCGGCTCAATAAGAATGCTTTGCGTGAA
GCTGCAATAGACTACATTATTGCCAATCGTAAGGAAATTTTTCCTTCTGCAAAATGGAAG
GAACTGAAAAATAATAATGTGCAACTTGCCTTACTTGTTACAGAGAAATTTATGATGACT
AATGCTTGA
>g1492.t1 Gene=g1492 Length=302
MSKEFEFKLPSITFLDEESETKVFNNEYGNWTISLNYKVNYLFGTIVYESIFDKHLIDTK
QIQVNVQISEPNYRNLFSSIAAKNCGGTTFLFEYMSNSHYSYLRTNFQISVKVKLPEVKY
KLINHEGAKGHLKKLFETGNHADITIQSNGKELKVHKLILMRSEVFEKMLTGPTKEAQSG
IIVIKDFKFEVIAEMCRYLYYDEIPKIQTLALLLLIAADKYMVEDLADKCEKFLLKNVNS
VNFHDILITADRLNKNALREAAIDYIIANRKEIFPSAKWKELKNNNVQLALLVTEKFMMT
NA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1492.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 121 | 232 | 0.000 |
| 6 | g1492.t1 | Gene3D | G3DSA:1.25.40.420 | - | 239 | 302 | 0.000 |
| 2 | g1492.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 18 | 299 | 0.000 |
| 3 | g1492.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 18 | 299 | 0.000 |
| 1 | g1492.t1 | Pfam | PF00651 | BTB/POZ domain | 132 | 237 | 0.000 |
| 8 | g1492.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 142 | 208 | 14.067 |
| 5 | g1492.t1 | SMART | SM00225 | BTB_4 | 142 | 238 | 0.000 |
| 4 | g1492.t1 | SUPERFAMILY | SSF54695 | POZ domain | 130 | 236 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed