General information for g14924.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14924 is located on chr_4: 3080827..3082228 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14924 | g14924.t1 | isoform | g14924.t1 | 3078705 | 3081678 |
| chr_4 | g14924 | g14924.t1 | exon | g14924.t1.exon1 | 3078705 | 3078725 |
| chr_4 | g14924 | g14924.t1 | cds | g14924.t1.CDS1 | 3078705 | 3078725 |
| chr_4 | g14924 | g14924.t1 | exon | g14924.t1.exon2 | 3079329 | 3079499 |
| chr_4 | g14924 | g14924.t1 | cds | g14924.t1.CDS2 | 3079329 | 3079499 |
| chr_4 | g14924 | g14924.t1 | exon | g14924.t1.exon3 | 3080827 | 3081678 |
| chr_4 | g14924 | g14924.t1 | cds | g14924.t1.CDS3 | 3080827 | 3081678 |
| chr_4 | g14924 | g14924.t1 | TTS | g14924.t1 | 3082220 | 3082220 |
| chr_4 | g14924 | g14924.t1 | TSS | g14924.t1 | NA | NA |
Sequences
>g14924.t1 Gene=g14924 Length=1044
ATGTTAGATATTACATTAAAACCTGAGCTATCTTTATTGTCAGCAGCCGCTGTTGGTAGT
ACAATAATTCCTCCATCATCAACATCGTCAGCATCATCCTCATCATCATCATCAGTGCAT
TTGCTTGGTCTTGCTGGTGCTATGGCATCACCTAGCAATGGTGCACAAGCCTCACCGCAA
ACACCGACATATCGAAAGAAAAAGTGCATTCGTTACAAAGAGTCAGCAGAAGAAGCGGCA
CAGCGAAATGAGCTCGATCACAGTCAATCAGATGATAATCTCGGCTCATGTGGTTCCGTT
GATGATGCTCATACTCCAGATGACGATACAGAGTCGCTCAATCAGTCGATGTCATCACCT
GGTGGCCTCAGTGGTCTTTCTAGTCTTCAATCGCCCTCAACCTCACTCGCCTCACCCATT
AACTTGCTTGCATCACCATCAACACCTCATCCAGTGCATCATCATGAAGAAAATGGTCTT
GTGGCATCACTTGTGAATCAATTAAATCGCAGCAAATGGGATGCAAGCAAAAGCAATAAT
GGTGTAAATAAAAATGGTGGCAATGGTTTGCTGAATGATGATAAAACAAAACAAGGCAGC
AATGATGTGCAAATAAAGACAGAACCAATGGATCAGTCAAATAATATGCAACAGCAACAA
CAGCAGCTACAGCAACAGCATCTTCATCTACAACAGCAACATCGACTTGATCCATTCTTT
TATGATAAGCTACCAATTATAAGAAATCCAGTTGGTGCTAATCCACGTGATGTCAACAAT
CCATTGAGTGTAAATCAATTGACAAAGCGAGATTTTCCTGCTCATACTGGCGGATATTAT
GCACATCCTTTTCAAAAGCCATTAATGGCACATCCACTCGCTCATCCTCATCATTTAGCG
CAGTTTCATGCAGCGAATTTCGCTAACTTTCAATTAGCAGCTGCTGCTGCTGTGCAGCAA
AATGCAAATGCACAGAAAGACAATGCAACATCAAATGGCGCTTCTCATCATCGTGACGAT
GGAAATGCAATTAGTGTGACGTGA
>g14924.t1 Gene=g14924 Length=347
MLDITLKPELSLLSAAAVGSTIIPPSSTSSASSSSSSSVHLLGLAGAMASPSNGAQASPQ
TPTYRKKKCIRYKESAEEAAQRNELDHSQSDDNLGSCGSVDDAHTPDDDTESLNQSMSSP
GGLSGLSSLQSPSTSLASPINLLASPSTPHPVHHHEENGLVASLVNQLNRSKWDASKSNN
GVNKNGGNGLLNDDKTKQGSNDVQIKTEPMDQSNNMQQQQQQLQQQHLHLQQQHRLDPFF
YDKLPIIRNPVGANPRDVNNPLSVNQLTKRDFPAHTGGYYAHPFQKPLMAHPLAHPHHLA
QFHAANFANFQLAAAAAVQQNANAQKDNATSNGASHHRDDGNAISVT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14924.t1 | Coils | Coil | Coil | 213 | 233 | - |
| 3 | g14924.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 132 | - |
| 5 | g14924.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 132 | - |
| 4 | g14924.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 198 | - |
| 1 | g14924.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 347 | - |
| 2 | g14924.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 338 | - |
| 9 | g14924.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 31 | - |
| 10 | g14924.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 9 | - |
| 11 | g14924.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 10 | 23 | - |
| 12 | g14924.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 24 | 31 | - |
| 8 | g14924.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 32 | 347 | - |
| 6 | g14924.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 31 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
