General information for g14924.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14924 is located on chr_4: 3080827..3082228 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14924 | g14924.t2 | isoform | g14924.t2 | 3080827 | 3082228 |
| chr_4 | g14924 | g14924.t2 | exon | g14924.t2.exon1 | 3080827 | 3082228 |
| chr_4 | g14924 | g14924.t2 | cds | g14924.t2.CDS1 | 3080983 | 3081678 |
| chr_4 | g14924 | g14924.t2 | TTS | g14924.t2 | 3082220 | 3082220 |
| chr_4 | g14924 | g14924.t2 | TSS | g14924.t2 | NA | NA |
Sequences
>g14924.t2 Gene=g14924 Length=1402
CGAAAGAAAAAGTGCATTCGTTACAAAGAGTCAGCAGAAGAAGCGGCACAGCGAAATGAG
CTCGATCACAGTCAATCAGATGATAATCTCGGCTCATGTGGTTCCGTTGATGATGCTCAT
ACTCCAGATGACGATACAGAGTCGCTCAATCAGTCGATGTCATCACCTGGTGGCCTCAGT
GGTCTTTCTAGTCTTCAATCGCCCTCAACCTCACTCGCCTCACCCATTAACTTGCTTGCA
TCACCATCAACACCTCATCCAGTGCATCATCATGAAGAAAATGGTCTTGTGGCATCACTT
GTGAATCAATTAAATCGCAGCAAATGGGATGCAAGCAAAAGCAATAATGGTGTAAATAAA
AATGGTGGCAATGGTTTGCTGAATGATGATAAAACAAAACAAGGCAGCAATGATGTGCAA
ATAAAGACAGAACCAATGGATCAGTCAAATAATATGCAACAGCAACAACAGCAGCTACAG
CAACAGCATCTTCATCTACAACAGCAACATCGACTTGATCCATTCTTTTATGATAAGCTA
CCAATTATAAGAAATCCAGTTGGTGCTAATCCACGTGATGTCAACAATCCATTGAGTGTA
AATCAATTGACAAAGCGAGATTTTCCTGCTCATACTGGCGGATATTATGCACATCCTTTT
CAAAAGCCATTAATGGCACATCCACTCGCTCATCCTCATCATTTAGCGCAGTTTCATGCA
GCGAATTTCGCTAACTTTCAATTAGCAGCTGCTGCTGCTGTGCAGCAAAATGCAAATGCA
CAGAAAGACAATGCAACATCAAATGGCGCTTCTCATCATCGTGACGATGGAAATGCAATT
AGTGTGACGTGATAAAAATTAACTTTTTTTTGGTTCATTTGAAATTTTCATCATTTGATT
TTTAAAGTTTTTTAAAATGTCAGGAAATTTTTTATGCTCGCACACAAATTTTAGTTAAAA
TTCACCAAGATAGTCCAATTTTTTTCTAATTAAAATTTAAGATTTTTTTGTTTATTTCAA
TTTATTTATGTTGATCTCAATTTATTTTTAACGCATTTTTGTCAGCTGATCTACGCAGAG
ACTTCACCAATTTAATAAAAATAATTTTAGATGATGAAAATTTAAATGAGCTGAAAAAAT
TAATTGAAAAGAAAACAAAAATTAGAGAAAATTTTAAACAGTTAAAAAAGTTTTGTAATT
TGAGATTTTGGAAAAGAATTTAATTTTTCTTATTTTGCGAATCACAAATATTTTTATATG
TACAATAATTTAATGACTACATTCTGTTGTTAATTTATATTCATTTAAATTTGATACCAA
ACCAATGAAATTTTATTTTGAATTGATTTCAATTATAATTTTGATAAATTTCCAAAAAAT
TCCTCTTCAGTTCTCAAAAAAA
>g14924.t2 Gene=g14924 Length=231
MSSPGGLSGLSSLQSPSTSLASPINLLASPSTPHPVHHHEENGLVASLVNQLNRSKWDAS
KSNNGVNKNGGNGLLNDDKTKQGSNDVQIKTEPMDQSNNMQQQQQQLQQQHLHLQQQHRL
DPFFYDKLPIIRNPVGANPRDVNNPLSVNQLTKRDFPAHTGGYYAHPFQKPLMAHPLAHP
HHLAQFHAANFANFQLAAAAAVQQNANAQKDNATSNGASHHRDDGNAISVT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14924.t2 | Coils | Coil | Coil | 97 | 117 | - |
| 4 | g14924.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 1 | g14924.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 82 | - |
| 2 | g14924.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 231 | - |
| 3 | g14924.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 222 | - |
| 8 | g14924.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 9 | g14924.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 10 | g14924.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 13 | - |
| 11 | g14924.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 21 | - |
| 7 | g14924.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 231 | - |
| 5 | g14924.t2 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 21 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
