General information for g14972.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g14972 is located on chr_4: 3366142..3367374 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14972 | g14972.t1 | TSS | g14972.t1 | 3366029 | 3366029 |
| chr_4 | g14972 | g14972.t1 | isoform | g14972.t1 | 3366142 | 3367374 |
| chr_4 | g14972 | g14972.t1 | exon | g14972.t1.exon1 | 3366142 | 3366185 |
| chr_4 | g14972 | g14972.t1 | cds | g14972.t1.CDS1 | 3366142 | 3366185 |
| chr_4 | g14972 | g14972.t1 | exon | g14972.t1.exon2 | 3366300 | 3367374 |
| chr_4 | g14972 | g14972.t1 | cds | g14972.t1.CDS2 | 3366300 | 3367374 |
| chr_4 | g14972 | g14972.t1 | TTS | g14972.t1 | 3367497 | 3367497 |
Sequences
>g14972.t1 Gene=g14972 Length=1119
ATGGCTGAAGATCAAAAGATTGAAAAATATTCTATAACGAATAGCTTATGGTCATTCAGA
TTCAGTTGGTCACAATATTCTTACGAGATGCTTAGACAAATTGAGAAAGCAATTATGAAA
TATCTCAAACTTCCATATCGAGGCTTTTACGTTGATATTGGTAATGTCATTGACGAAGGT
GACAAATTGTGGACGCTTGCAGTAAATGAAAATGGAGCAGATAATAAAAAAGTTCCGCTC
GTGCTACTTCATGGACTTGGCGCTGGTTCTGCTTTATGGATAATGAATTATGACGACATT
GCTAAAGACCGTCCTGTTTATGCAATAGACTTGCCTGGATTTGGACGTAGTTCTAGATCA
AATTTTGATAAAGATGGTGAAGTTGCTGAAATGCAATTTATAAGATCAATTGAAGAATGG
AGAAAGGAAGTAAATTTACAAAAATTTGTTCTTCTTGGTCATAGTTTTGGTGCATATTTA
GCTTGTTCTTATACACTGACATATCCATCAAGAGTTCATCATTTAATACTTGCCGACGCA
TGGGGATTTCCAGAAAAACCAGCTGACGTTAATCAAAAATATAATGTGCCATTATGGGTT
AAAGGAATTGCTTATCTTGTGCAACCTTTAAATCCTTTATGGGCGATTCGAGCAGCTGGA
CCACTTGGTCAGAAATTAGTTGAAAAAACTCGACCTGATATTATGAGAAAATTTAGTTCA
GTGATAAAAGATGAAAGTTTAATTCCAAGTTATCTCTATCAATGCAATTCACAGTCACCA
ACGGGCGAAAGTGCTTTTCATTCAATGATGCAGAGTTTTGGCTGGGCAAAAAATCCAATG
ATTAAAAGAATTCATGAAATTAGAAAAGATGTTCCGATAACTGTTATTTATGGCAGTAGA
AGTTGGGTTGATAGTGCATCAGGGAAAATTATTCAACAATTGAGGCCTGGAAGTTATGTT
AAAAGTTATATAATAAATCAAGCTGGTCATCATGTTTATGCTGATAAAGCTGAAGAATTT
AACTCAATTGTTGTTAAAACTTGTAATTTAACTGAAGAAGAAATTCAAAAACAAATTCTT
GAAGATAATGAAAAAGAAGAAAATTCTGATGATAACTGA
>g14972.t1 Gene=g14972 Length=372
MAEDQKIEKYSITNSLWSFRFSWSQYSYEMLRQIEKAIMKYLKLPYRGFYVDIGNVIDEG
DKLWTLAVNENGADNKKVPLVLLHGLGAGSALWIMNYDDIAKDRPVYAIDLPGFGRSSRS
NFDKDGEVAEMQFIRSIEEWRKEVNLQKFVLLGHSFGAYLACSYTLTYPSRVHHLILADA
WGFPEKPADVNQKYNVPLWVKGIAYLVQPLNPLWAIRAAGPLGQKLVEKTRPDIMRKFSS
VIKDESLIPSYLYQCNSQSPTGESAFHSMMQSFGWAKNPMIKRIHEIRKDVPITVIYGSR
SWVDSASGKIIQQLRPGSYVKSYIINQAGHHVYADKAEEFNSIVVKTCNLTEEEIQKQIL
EDNEKEENSDDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g14972.t1 | Coils | Coil | Coil | 350 | 370 | - |
| 8 | g14972.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 21 | 349 | 9.1E-43 |
| 2 | g14972.t1 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 15 | 350 | 2.8E-118 |
| 3 | g14972.t1 | PANTHER | PTHR42886 | RE40534P-RELATED | 15 | 350 | 2.8E-118 |
| 5 | g14972.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 103 | 118 | 2.6E-7 |
| 4 | g14972.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 151 | 164 | 2.6E-7 |
| 6 | g14972.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 165 | 178 | 2.6E-7 |
| 1 | g14972.t1 | Pfam | PF00561 | alpha/beta hydrolase fold | 79 | 336 | 6.3E-25 |
| 7 | g14972.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 44 | 346 | 1.25E-50 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
