Gene loci information

Transcript annotation

  • This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14972 g14972.t2 TSS g14972.t2 3366029 3366029
chr_4 g14972 g14972.t2 isoform g14972.t2 3366064 3367374
chr_4 g14972 g14972.t2 exon g14972.t2.exon1 3366064 3366065
chr_4 g14972 g14972.t2 exon g14972.t2.exon2 3366300 3367374
chr_4 g14972 g14972.t2 cds g14972.t2.CDS1 3366343 3367374
chr_4 g14972 g14972.t2 TTS g14972.t2 3367497 3367497

Sequences

>g14972.t2 Gene=g14972 Length=1077
AACTTATGGTCATTCAGATTCAGTTGGTCACAATATTCTTACGAGATGCTTAGACAAATT
GAGAAAGCAATTATGAAATATCTCAAACTTCCATATCGAGGCTTTTACGTTGATATTGGT
AATGTCATTGACGAAGGTGACAAATTGTGGACGCTTGCAGTAAATGAAAATGGAGCAGAT
AATAAAAAAGTTCCGCTCGTGCTACTTCATGGACTTGGCGCTGGTTCTGCTTTATGGATA
ATGAATTATGACGACATTGCTAAAGACCGTCCTGTTTATGCAATAGACTTGCCTGGATTT
GGACGTAGTTCTAGATCAAATTTTGATAAAGATGGTGAAGTTGCTGAAATGCAATTTATA
AGATCAATTGAAGAATGGAGAAAGGAAGTAAATTTACAAAAATTTGTTCTTCTTGGTCAT
AGTTTTGGTGCATATTTAGCTTGTTCTTATACACTGACATATCCATCAAGAGTTCATCAT
TTAATACTTGCCGACGCATGGGGATTTCCAGAAAAACCAGCTGACGTTAATCAAAAATAT
AATGTGCCATTATGGGTTAAAGGAATTGCTTATCTTGTGCAACCTTTAAATCCTTTATGG
GCGATTCGAGCAGCTGGACCACTTGGTCAGAAATTAGTTGAAAAAACTCGACCTGATATT
ATGAGAAAATTTAGTTCAGTGATAAAAGATGAAAGTTTAATTCCAAGTTATCTCTATCAA
TGCAATTCACAGTCACCAACGGGCGAAAGTGCTTTTCATTCAATGATGCAGAGTTTTGGC
TGGGCAAAAAATCCAATGATTAAAAGAATTCATGAAATTAGAAAAGATGTTCCGATAACT
GTTATTTATGGCAGTAGAAGTTGGGTTGATAGTGCATCAGGGAAAATTATTCAACAATTG
AGGCCTGGAAGTTATGTTAAAAGTTATATAATAAATCAAGCTGGTCATCATGTTTATGCT
GATAAAGCTGAAGAATTTAACTCAATTGTTGTTAAAACTTGTAATTTAACTGAAGAAGAA
ATTCAAAAACAAATTCTTGAAGATAATGAAAAAGAAGAAAATTCTGATGATAACTGA

>g14972.t2 Gene=g14972 Length=343
MLRQIEKAIMKYLKLPYRGFYVDIGNVIDEGDKLWTLAVNENGADNKKVPLVLLHGLGAG
SALWIMNYDDIAKDRPVYAIDLPGFGRSSRSNFDKDGEVAEMQFIRSIEEWRKEVNLQKF
VLLGHSFGAYLACSYTLTYPSRVHHLILADAWGFPEKPADVNQKYNVPLWVKGIAYLVQP
LNPLWAIRAAGPLGQKLVEKTRPDIMRKFSSVIKDESLIPSYLYQCNSQSPTGESAFHSM
MQSFGWAKNPMIKRIHEIRKDVPITVIYGSRSWVDSASGKIIQQLRPGSYVKSYIINQAG
HHVYADKAEEFNSIVVKTCNLTEEEIQKQILEDNEKEENSDDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g14972.t2 Coils Coil Coil 321 341 -
8 g14972.t2 Gene3D G3DSA:3.40.50.1820 - 1 320 1.2E-42
2 g14972.t2 PANTHER PTHR42886:SF34 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 2 321 9.0E-116
3 g14972.t2 PANTHER PTHR42886 RE40534P-RELATED 2 321 9.0E-116
6 g14972.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 74 89 2.1E-7
5 g14972.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 135 2.1E-7
4 g14972.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 136 149 2.1E-7
1 g14972.t2 Pfam PF00561 alpha/beta hydrolase fold 50 307 4.9E-25
7 g14972.t2 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 16 317 1.0E-50

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values