General information for g14972.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g14972 is located on chr_4: 3366142..3367374 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14972 | g14972.t3 | TSS | g14972.t3 | 3366029 | 3366029 |
| chr_4 | g14972 | g14972.t3 | isoform | g14972.t3 | 3366142 | 3367374 |
| chr_4 | g14972 | g14972.t3 | exon | g14972.t3.exon1 | 3366142 | 3367374 |
| chr_4 | g14972 | g14972.t3 | cds | g14972.t3.CDS1 | 3366343 | 3367374 |
| chr_4 | g14972 | g14972.t3 | TTS | g14972.t3 | 3367497 | 3367497 |
Sequences
>g14972.t3 Gene=g14972 Length=1233
ATGGCTGAAGATCAAAAGATTGAAAAATATTCTATAACGAATAGGTGAAAAGAACTTTAA
CTAATTAAGCTTATTTGTGGCCTTAATTTAGAACTTATTAGTGTTTTTAATTATAGTTGT
TTGTCATTTAATTAACAATGTTAAATATCTCATTTTAGCTTATGGTCATTCAGATTCAGT
TGGTCACAATATTCTTACGAGATGCTTAGACAAATTGAGAAAGCAATTATGAAATATCTC
AAACTTCCATATCGAGGCTTTTACGTTGATATTGGTAATGTCATTGACGAAGGTGACAAA
TTGTGGACGCTTGCAGTAAATGAAAATGGAGCAGATAATAAAAAAGTTCCGCTCGTGCTA
CTTCATGGACTTGGCGCTGGTTCTGCTTTATGGATAATGAATTATGACGACATTGCTAAA
GACCGTCCTGTTTATGCAATAGACTTGCCTGGATTTGGACGTAGTTCTAGATCAAATTTT
GATAAAGATGGTGAAGTTGCTGAAATGCAATTTATAAGATCAATTGAAGAATGGAGAAAG
GAAGTAAATTTACAAAAATTTGTTCTTCTTGGTCATAGTTTTGGTGCATATTTAGCTTGT
TCTTATACACTGACATATCCATCAAGAGTTCATCATTTAATACTTGCCGACGCATGGGGA
TTTCCAGAAAAACCAGCTGACGTTAATCAAAAATATAATGTGCCATTATGGGTTAAAGGA
ATTGCTTATCTTGTGCAACCTTTAAATCCTTTATGGGCGATTCGAGCAGCTGGACCACTT
GGTCAGAAATTAGTTGAAAAAACTCGACCTGATATTATGAGAAAATTTAGTTCAGTGATA
AAAGATGAAAGTTTAATTCCAAGTTATCTCTATCAATGCAATTCACAGTCACCAACGGGC
GAAAGTGCTTTTCATTCAATGATGCAGAGTTTTGGCTGGGCAAAAAATCCAATGATTAAA
AGAATTCATGAAATTAGAAAAGATGTTCCGATAACTGTTATTTATGGCAGTAGAAGTTGG
GTTGATAGTGCATCAGGGAAAATTATTCAACAATTGAGGCCTGGAAGTTATGTTAAAAGT
TATATAATAAATCAAGCTGGTCATCATGTTTATGCTGATAAAGCTGAAGAATTTAACTCA
ATTGTTGTTAAAACTTGTAATTTAACTGAAGAAGAAATTCAAAAACAAATTCTTGAAGAT
AATGAAAAAGAAGAAAATTCTGATGATAACTGA
>g14972.t3 Gene=g14972 Length=343
MLRQIEKAIMKYLKLPYRGFYVDIGNVIDEGDKLWTLAVNENGADNKKVPLVLLHGLGAG
SALWIMNYDDIAKDRPVYAIDLPGFGRSSRSNFDKDGEVAEMQFIRSIEEWRKEVNLQKF
VLLGHSFGAYLACSYTLTYPSRVHHLILADAWGFPEKPADVNQKYNVPLWVKGIAYLVQP
LNPLWAIRAAGPLGQKLVEKTRPDIMRKFSSVIKDESLIPSYLYQCNSQSPTGESAFHSM
MQSFGWAKNPMIKRIHEIRKDVPITVIYGSRSWVDSASGKIIQQLRPGSYVKSYIINQAG
HHVYADKAEEFNSIVVKTCNLTEEEIQKQILEDNEKEENSDDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g14972.t3 | Coils | Coil | Coil | 321 | 341 | - |
| 8 | g14972.t3 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 320 | 1.2E-42 |
| 2 | g14972.t3 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 2 | 321 | 9.0E-116 |
| 3 | g14972.t3 | PANTHER | PTHR42886 | RE40534P-RELATED | 2 | 321 | 9.0E-116 |
| 6 | g14972.t3 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 74 | 89 | 2.1E-7 |
| 5 | g14972.t3 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 122 | 135 | 2.1E-7 |
| 4 | g14972.t3 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 136 | 149 | 2.1E-7 |
| 1 | g14972.t3 | Pfam | PF00561 | alpha/beta hydrolase fold | 50 | 307 | 4.9E-25 |
| 7 | g14972.t3 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 16 | 317 | 1.0E-50 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
