General information for g14998.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Plancitoxin-1.
Parent gene
- The parent gene g14998 is located on chr_4: 3465074..3474915 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14998 | g14998.t6 | TTS | g14998.t6 | 3465055 | 3465055 |
| chr_4 | g14998 | g14998.t6 | isoform | g14998.t6 | 3465074 | 3466476 |
| chr_4 | g14998 | g14998.t6 | exon | g14998.t6.exon1 | 3465074 | 3465621 |
| chr_4 | g14998 | g14998.t6 | cds | g14998.t6.CDS1 | 3465074 | 3465607 |
| chr_4 | g14998 | g14998.t6 | exon | g14998.t6.exon2 | 3465699 | 3465919 |
| chr_4 | g14998 | g14998.t6 | exon | g14998.t6.exon3 | 3466041 | 3466305 |
| chr_4 | g14998 | g14998.t6 | exon | g14998.t6.exon4 | 3466367 | 3466476 |
| chr_4 | g14998 | g14998.t6 | TSS | g14998.t6 | 3466530 | 3466530 |
Sequences
>g14998.t6 Gene=g14998 Length=1144
ATGAGAAATTTTTTTATCAATTTTTTGATAATTTTGCTCTTTATTAGAAATTCATTTGAA
ATTGCTGAAAGATTGGGATGTCAAGATGAAAATGGTGATATGGTTGACTGGTTTTACCTT
TATAAACTTCCGAGCAAATATTCACACATATCAAATTCAGGTCTTGAATATCTTTACATT
ACTCCTCATTCTTCTTCTTTATCATCATGGACAAAATCAATAAAATTAATAAATTCAACG
GAAAGTATGCCTGGAAGAACTCTTTCAATAATTTATAACAAAAGTCACAACCATGATTTG
CTATTTGCAATGTACAATGATGAACATCCAAATGGAGATGTTGATACAAAAAGAGGTCAC
ACTAAAGGCGTTGTTGTCGCAAATGACATTTCTGGTTTCTGGCTAGTTCATTCAGTTCCA
AAATTCCCACCAGCTGCAGATGAAGAAAAATATGACTATCCACATACTGGTAAAATTTAT
GGTCAAAGTTTTCTTTGCATTAGTTTTACTGCTGAACAAATTGGAATTGTTGGAAAGCAG
CTTCAATATAATGAACCAGCTTTTTATTCTTCACAAGTTCCAAAATATCTTGAACATTGA
AGCTTTAAAAATGAAAGAAATTAAATCAGCTCCATTTTATCACATTGCAACACTTCGATC
ACGTCATGGAACAATTTTTACATCTTATGCAAAATCAAAAGCTTTTAATAAAGAACTTTA
TGAAGATTTTGTTGCTCCAAATTATCTGGCTGGTGATTTTTATGTTGAATCATGGCAACA
CGGACGGGGAAATATAAAAAGTGATTGTACAAAACCAACAAAAGTTTACAACATAAAAGA
TGTTTCAATTCATGGATCAGACTTTGGAAATGATGATAAAATTATTTTTGAAACATTAAA
AGATCATTCAAAATGGTTAGTTAGTAAAGAAAATAATTTGACATGCATTGGTGATATAAA
TCGACAGGAACATCAGAAAGTTAGAGGAGGTGGAACTGTTTGTTTAAAAAATATTACAAT
TTCTAATATTTATACCAAAAGTATTGAAAGTTCTGAACCTTGCATAAAGAATCAATTTAA
AAAATATTTGCCAGTAAAGAAAACTTCTAAAAATATTAAACTTTATTTTGATATTTTAGT
ATAA
>g14998.t6 Gene=g14998 Length=177
MKEIKSAPFYHIATLRSRHGTIFTSYAKSKAFNKELYEDFVAPNYLAGDFYVESWQHGRG
NIKSDCTKPTKVYNIKDVSIHGSDFGNDDKIIFETLKDHSKWLVSKENNLTCIGDINRQE
HQKVRGGGTVCLKNITISNIYTKSIESSEPCIKNQFKKYLPVKKTSKNIKLYFDILV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14998.t6 | CDD | cd09121 | PLDc_DNaseII_2 | 8 | 151 | 0 |
| 2 | g14998.t6 | PANTHER | PTHR10858:SF23 | DEOXYRIBONUCLEASE II | 5 | 153 | 0 |
| 3 | g14998.t6 | PANTHER | PTHR10858 | DEOXYRIBONUCLEASE II | 5 | 153 | 0 |
| 1 | g14998.t6 | Pfam | PF03265 | Deoxyribonuclease II | 4 | 151 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004531 | deoxyribonuclease II activity | MF |
| GO:0006259 | DNA metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
