General information for g15001.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O.
Parent gene
- The parent gene g15001 is located on chr_4: 3481398..3485361 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15001 | g15001.t2 | TSS | g15001.t2 | 3478271 | 3478271 |
| chr_4 | g15001 | g15001.t2 | isoform | g15001.t2 | 3478393 | 3479615 |
| chr_4 | g15001 | g15001.t2 | exon | g15001.t2.exon1 | 3478393 | 3478476 |
| chr_4 | g15001 | g15001.t2 | cds | g15001.t2.CDS1 | 3478393 | 3478476 |
| chr_4 | g15001 | g15001.t2 | exon | g15001.t2.exon2 | 3478608 | 3478673 |
| chr_4 | g15001 | g15001.t2 | cds | g15001.t2.CDS2 | 3478608 | 3478673 |
| chr_4 | g15001 | g15001.t2 | exon | g15001.t2.exon3 | 3478745 | 3478792 |
| chr_4 | g15001 | g15001.t2 | cds | g15001.t2.CDS3 | 3478745 | 3478792 |
| chr_4 | g15001 | g15001.t2 | exon | g15001.t2.exon4 | 3478854 | 3479107 |
| chr_4 | g15001 | g15001.t2 | cds | g15001.t2.CDS4 | 3478854 | 3479107 |
| chr_4 | g15001 | g15001.t2 | exon | g15001.t2.exon5 | 3479164 | 3479615 |
| chr_4 | g15001 | g15001.t2 | cds | g15001.t2.CDS5 | 3479164 | 3479614 |
| chr_4 | g15001 | g15001.t2 | TTS | g15001.t2 | NA | NA |
Sequences
>g15001.t2 Gene=g15001 Length=904
ATGAATCAATACTTTTATGAAGATCAAGTTTTCACTGTTGATAAGAAAGGAAACATAAAA
TTCGGTTTAGTTGTTGAAAATGAAGTTCCAAGTGATGGTGAAGAAAATCAAACAGAAACG
GAAAAGTTTCTTAGAAAAGGCGAGCTTAGGGTTGTATGGTATCCAGAAGGAAAAGATGAA
GTTGTTTTGGAGAAAAATGTCGGATTGGCTGATAGAACTTTAATGCCAGGCGATGTAGTG
AGACGAATGACTGACACTGACACACAAAGAGGCTATTGTCGTGAAATTCATGTGAAAGCT
GATTTAAAAATTATTGGCAATTCTCGTTATGTTGTTAAAGATGTTGCCTCAGAGCGACTT
GTTCCTATTGTGTCAATGCCAAGAGATAATGCCGTTTGCTTAGACTCATGGGTTGGAAGT
ACTAAAAATATTGATGAAAAGTTAACACTGAGATCAACATGTGGTTCAATTTTAGAATTA
CGACCCGACATTGATTATTTTCCATTCAAAGATAAAAATAATCGTTCAGTTTTTTCAAAT
AATTTATTTTACGTTGGTCAACAACTCATTGGTCCAGTAAATGAACTCGAAAATGCAAAA
TGGATCGTTCAAACACCAGAAATGCGTGCAAGTCGAAAGCACAAGGCAGAAAGGAAATTT
ACAGTGCAATCAGTTGAAATTGATGGAGTTTATGTACATTGGCAATGTAAAGCATCGTGT
GAGGAAAATTCAAGTTCAAATGACTCGGGAATTCCTAAACGATACATAACTGGTGATGAT
TTGAAAAGAATGAAGAGATTAAATTTATTTGAAAGCTGCATGTTACAAATTAACGATAAA
AATTACTTAAATATTGACGAAAACGATGTAATAGTTAGAAAATCACAATGGAAAAAAGAA
CAAA
>g15001.t2 Gene=g15001 Length=301
MNQYFYEDQVFTVDKKGNIKFGLVVENEVPSDGEENQTETEKFLRKGELRVVWYPEGKDE
VVLEKNVGLADRTLMPGDVVRRMTDTDTQRGYCREIHVKADLKIIGNSRYVVKDVASERL
VPIVSMPRDNAVCLDSWVGSTKNIDEKLTLRSTCGSILELRPDIDYFPFKDKNNRSVFSN
NLFYVGQQLIGPVNELENAKWIVQTPEMRASRKHKAERKFTVQSVEIDGVYVHWQCKASC
EENSSSNDSGIPKRYITGDDLKRMKRLNLFESCMLQINDKNYLNIDENDVIVRKSQWKKE
Q
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed