General information for g15007.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Venom carboxylesterase-6.
Parent gene
- The parent gene g15007 is located on chr_4: 3499603..3501820 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15007 | g15007.t2 | isoform | g15007.t2 | 3498314 | 3500758 |
| chr_4 | g15007 | g15007.t2 | exon | g15007.t2.exon1 | 3498314 | 3498667 |
| chr_4 | g15007 | g15007.t2 | exon | g15007.t2.exon2 | 3498719 | 3498776 |
| chr_4 | g15007 | g15007.t2 | exon | g15007.t2.exon3 | 3498828 | 3499071 |
| chr_4 | g15007 | g15007.t2 | exon | g15007.t2.exon4 | 3499134 | 3499384 |
| chr_4 | g15007 | g15007.t2 | cds | g15007.t2.CDS1 | 3499157 | 3499384 |
| chr_4 | g15007 | g15007.t2 | exon | g15007.t2.exon5 | 3499456 | 3499615 |
| chr_4 | g15007 | g15007.t2 | cds | g15007.t2.CDS2 | 3499456 | 3499615 |
| chr_4 | g15007 | g15007.t2 | exon | g15007.t2.exon6 | 3499707 | 3499885 |
| chr_4 | g15007 | g15007.t2 | cds | g15007.t2.CDS3 | 3499707 | 3499885 |
| chr_4 | g15007 | g15007.t2 | exon | g15007.t2.exon7 | 3499938 | 3500233 |
| chr_4 | g15007 | g15007.t2 | cds | g15007.t2.CDS4 | 3499938 | 3500233 |
| chr_4 | g15007 | g15007.t2 | exon | g15007.t2.exon8 | 3500530 | 3500758 |
| chr_4 | g15007 | g15007.t2 | cds | g15007.t2.CDS5 | 3500530 | 3500758 |
| chr_4 | g15007 | g15007.t2 | TSS | g15007.t2 | NA | NA |
| chr_4 | g15007 | g15007.t2 | TTS | g15007.t2 | NA | NA |
Sequences
>g15007.t2 Gene=g15007 Length=1771
ATGAAATTTTTACTAATTTTCATTTTTGCTTTCAATTTTATTTTTGACTTTTCTTCTGCA
CGAACTTCAGAAAGCTTAAAAGTAGAAATCGAAGATGGAAAAATTATTGGTGGATGGATG
ACATCACTTTCAGGCAAAATTATTCGTGCTTTTATGGGAATTCCTTATGCTGCACCACCA
ATTGGTGATTTAAGATTTAAAGCACCACAAAAAGTTAAACCATGGGGAAATGTCAGTTTA
TTAGCTCAAAAAGAGCCACCAATGTGTACACAAATTAACACTTTTAATGACATGTACAGT
GAAACTGTTTATGGACAAGAAGATTGCTTATATTTGAATGTTTATACACCTGAGATAACA
AAAAAAATTACTAAAAAATTGCCTGTGCTTGTTTGGATTCACAGTGGTGTATGCATGGCT
TGTTGGTCATGCTGGATATACAGATTATAGTCCAGAATATTTACTTGAACATGACATTAT
TCTTGTCACTGGAAATTATCGCTTGGGTGCACTTGGATTTCTTTCAACTGAAGATGAATA
TTCACCAGGAAATTACGGTTTCAAAGACCAATTGGAAATTCTCAGATGGGTTAAGAAAAA
TATTGAGAAATTTGGTGGTGATGCAAATTCTGTTACTCTTGCAGGAGAAAGTGCAGGTGC
AGCTGCTGTGAATTATCACATGTTTTCACCAAAATCACGTGGACTTTTTCATAGAGCAAT
TTCACAATCAGGACATTTATTCAATCCTTGGGCAGATCCAGCTCATAAAGGAAAAGCAAA
AGAAAATGCAATAAGACTGGCAGAAAAATTACATTGTTCAAAATCAGGAATTTCTACCAA
AAGTTTGATTGAATGTTTGAGAAAAATTTCAGCTGAAGAAATCACTCGAGTTCTACGTGA
TCTTCCTGTATGGGACAACGATCCATTAATTGCATTTCAACCAGTCATTGAGAATTTTGA
TTCAAATGAAGAGCCATTTATTTCTGAATTAAAATATGAAAAATTATCTTTAGATATTCC
ATGGATTGTTGGTATAACAAGTGAAGAAGGATTAATGAAAAGTGCTTCATTTTTTAACAA
CGCAGAAAAACTCAAAGAATTAGAAGAAAATTGGAAGAAAATTTTACCAGTTACATTCTA
CTATGATCATCTTCCTGAAAATGAAGTTGATGAAATAAATCAAAAAATTTACAATTTTTA
TTTCAAAGAAAGTTCTTTTAGCAATAACAAGGAAAATTTGACGAATATGTGGTCTGAAGG
ATGGTTTGGTGGATTCTTTGATAATCTTTCATATAGATTCAAAAGTAATGATCGTGAAAA
CACATTTGTTTATTTATTCACTCACAAAGGAGCTGCAAGTTTTTCTGAATATTTTTTGGG
AGAAAAAGAAGAATTTTATGGAACATGTCATGTTGATGAAATTTTTCATTTGTTTCCTAT
CCAGAAATATTTTCCAGATTATATGAGTGCTATGCCAACACAGGAAGACAGAAAAATTAC
TGAAATAATTACAAAGCTTTGGGCCAATTTTGTTACTTTTGGAAATCCCACACCGAATTA
TTCGGAAGAATCCAAATTCCCTATTTGGAAACCAGCGACGAAATTTCCACTTGATTTTAT
GAAAATTGGAAATGAAAATGGAGCAAGTGAAATTTTATTGGAAATGAAAAAAGATTTATA
TCCTGAAAGAGCAAATTTTTGGATAGAACTTAGAAAAAAATATGGTCTTCATCTTTGGGC
ATTTGATTTAAATGGAAGAGATGAATTATAA
>g15007.t2 Gene=g15007 Length=363
MFSPKSRGLFHRAISQSGHLFNPWADPAHKGKAKENAIRLAEKLHCSKSGISTKSLIECL
RKISAEEITRVLRDLPVWDNDPLIAFQPVIENFDSNEEPFISELKYEKLSLDIPWIVGIT
SEEGLMKSASFFNNAEKLKELEENWKKILPVTFYYDHLPENEVDEINQKIYNFYFKESSF
SNNKENLTNMWSEGWFGGFFDNLSYRFKSNDRENTFVYLFTHKGAASFSEYFLGEKEEFY
GTCHVDEIFHLFPIQKYFPDYMSAMPTQEDRKITEIITKLWANFVTFGNPTPNYSEESKF
PIWKPATKFPLDFMKIGNENGASEILLEMKKDLYPERANFWIELRKKYGLHLWAFDLNGR
DEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15007.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 345 | 0 |
| 2 | g15007.t2 | PANTHER | PTHR11559:SF395 | CARBOXYLIC ESTER HYDROLASE | 1 | 348 | 0 |
| 3 | g15007.t2 | PANTHER | PTHR11559 | CARBOXYLESTERASE | 1 | 348 | 0 |
| 1 | g15007.t2 | Pfam | PF00135 | Carboxylesterase family | 1 | 341 | 0 |
| 4 | g15007.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 1 | 341 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed