General information for g15007.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15007 is located on chr_4: 3499603..3501820 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15007 | g15007.t3 | isoform | g15007.t3 | 3499603 | 3501820 |
| chr_4 | g15007 | g15007.t3 | exon | g15007.t3.exon1 | 3499603 | 3499615 |
| chr_4 | g15007 | g15007.t3 | cds | g15007.t3.CDS1 | 3499603 | 3499615 |
| chr_4 | g15007 | g15007.t3 | exon | g15007.t3.exon2 | 3499707 | 3499885 |
| chr_4 | g15007 | g15007.t3 | cds | g15007.t3.CDS2 | 3499707 | 3499885 |
| chr_4 | g15007 | g15007.t3 | exon | g15007.t3.exon3 | 3499938 | 3500233 |
| chr_4 | g15007 | g15007.t3 | cds | g15007.t3.CDS3 | 3499938 | 3500233 |
| chr_4 | g15007 | g15007.t3 | exon | g15007.t3.exon4 | 3500530 | 3500767 |
| chr_4 | g15007 | g15007.t3 | cds | g15007.t3.CDS4 | 3500530 | 3500758 |
| chr_4 | g15007 | g15007.t3 | exon | g15007.t3.exon5 | 3501665 | 3501820 |
| chr_4 | g15007 | g15007.t3 | TSS | g15007.t3 | NA | NA |
| chr_4 | g15007 | g15007.t3 | TTS | g15007.t3 | NA | NA |
Sequences
>g15007.t3 Gene=g15007 Length=882
ATGAAAAGTGCTTCATTTTTTAACAACGCAGAAAAACTCAAAGAATTAGAAGAAAATTGG
AAGAAAATTTTACCAGTTACATTCTACTATGATCATCTTCCTGAAAATGAAGTTGATGAA
ATAAATCAAAAAATTTACAATTTTTATTTCAAAGAAAGTTCTTTTAGCAATAACAAGGAA
AATTTGACGAATATGTGGTCTGAAGGATGGTTTGGTGGATTCTTTGATAATCTTTCATAT
AGATTCAAAAGTAATGATCGTGAAAACACATTTGTTTATTTATTCACTCACAAAGGAGCT
GCAAGTTTTTCTGAATATTTTTTGGGAGAAAAAGAAGAATTTTATGGAACATGTCATGTT
GATGAAATTTTTCATTTGTTTCCTATCCAGAAATATTTTCCAGATTATATGAGTGCTATG
CCAACACAGGAAGACAGAAAAATTACTGAAATAATTACAAAGCTTTGGGCCAATTTTGTT
ACTTTTGGAAATCCCACACCGAATTATTCGGAAGAATCCAAATTCCCTATTTGGAAACCA
GCGACGAAATTTCCACTTGATTTTATGAAAATTGGAAATGAAAATGGAGCAAGTGAAATT
TTATTGGAAATGAAAAAAGATTTATATCCTGAAAGAGCAAATTTTTGGATAGAACTTAGA
AAAAAATATGGTCTTCATCTTTGGGCATTTGATTTAAATGGAAGAGATGAATTATAAAAT
ATTAGGAAATATTTTATGTAGCAGGTTTAGAAAACTATAACGAAAATTTGATGAAAGTAA
AAATTCACGCAATATTTGATCACTAAATTTTAAACTTTTTAGTATTTTTTTGATAGAATC
AAAAATTTTACAAGTTAAATATAAACAAAAATCTTCAAAATT
>g15007.t3 Gene=g15007 Length=238
MKSASFFNNAEKLKELEENWKKILPVTFYYDHLPENEVDEINQKIYNFYFKESSFSNNKE
NLTNMWSEGWFGGFFDNLSYRFKSNDRENTFVYLFTHKGAASFSEYFLGEKEEFYGTCHV
DEIFHLFPIQKYFPDYMSAMPTQEDRKITEIITKLWANFVTFGNPTPNYSEESKFPIWKP
ATKFPLDFMKIGNENGASEILLEMKKDLYPERANFWIELRKKYGLHLWAFDLNGRDEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15007.t3 | Gene3D | G3DSA:3.40.50.1820 | - | 2 | 220 | 0 |
| 2 | g15007.t3 | PANTHER | PTHR11559:SF395 | CARBOXYLIC ESTER HYDROLASE | 1 | 223 | 0 |
| 3 | g15007.t3 | PANTHER | PTHR11559 | CARBOXYLESTERASE | 1 | 223 | 0 |
| 1 | g15007.t3 | Pfam | PF00135 | Carboxylesterase family | 7 | 216 | 0 |
| 4 | g15007.t3 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 15 | 223 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed