General information for g15017.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peroxisomal acyl-coenzyme A oxidase 3.
Parent gene
- The parent gene g15017 is located on chr_4: 3536016..3537099 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15017 | g15017.t2 | TTS | g15017.t2 | 3534309 | 3534309 |
| chr_4 | g15017 | g15017.t2 | isoform | g15017.t2 | 3534396 | 3535768 |
| chr_4 | g15017 | g15017.t2 | exon | g15017.t2.exon1 | 3534396 | 3534958 |
| chr_4 | g15017 | g15017.t2 | cds | g15017.t2.CDS1 | 3534396 | 3534958 |
| chr_4 | g15017 | g15017.t2 | exon | g15017.t2.exon2 | 3535019 | 3535768 |
| chr_4 | g15017 | g15017.t2 | cds | g15017.t2.CDS2 | 3535019 | 3535661 |
| chr_4 | g15017 | g15017.t2 | TSS | g15017.t2 | NA | NA |
Sequences
>g15017.t2 Gene=g15017 Length=1313
TTCTTTTTAGCAATTATAAAATTCCCAAAGAATATCTTCTTTCAAAAACTGGTGATGTTG
ATGATGAAGGAAATTTCATAACACAATATAAAGACCCAAAAAAGCGCATGGGTCTATCAT
TTGCAGCTTTATCTGGTGGTCGAGTTGGAATATGTGAACTTGCAACAACTTATGGAATAA
CAGCAATAATAATTGCAATTCGTTATTCAGCAAGTCGTAAACAATTTGGACCTGATAATA
GCAATATTGAGTATCCAGTGCTTGAATATCAAACACAACAATATCGACTTATTCCACATT
TAGCAAGTATCTATGCAGTGAGATTTTTCTCAAATTGGATTGGACGTGAATATGGAAAAA
TGACACTTAAAGGTTTCACTGGTGAAAAAGTTAGTGTTGAAAGTGGCATGGAAATGCATG
CAATTTCATCAGCTGGTAAGCCAGTTTCTGGCTGGATTGTTAGAGATTGCATACAAGACT
GTAGAGAAGCATGTGGTGGACATGGATACTTGAAATGTGCACGATTGGGTGATTTGAGAA
ATGACAACGATCCAAATTTGACTTATGAAGGTGAAAATAACGTTTTAATTCAACAAGCTT
CAAATTTCTTAATTGCTATACGAGCAAAAGGATGGAATTCTTTTGAAAATGCATCACCAT
TGGGAACTGTTGCATTTTTAAAAGATGGTGAAGCAATTTTAAGATCAAAATGGAATTGGT
CTAAAATTGAATGTGTGATGAAACCTGAAAATCAACTAACAATTATGAATTTCATAGTGG
CTTATCTTCTTGAAAAAACTTTTAATCGTACAAAATCACTTCAATCACAGGGACAATCAT
CCTTTGATGTTCGAAATAATTCTCAAGTTTTCCATGCTAATTGTCTTGCAATTGCTTATG
GACATCGACAAATTTATTCAACATTCCTCAATGAAATTCAAAATTTACCAAATTCTTCAT
CAGAGCGAGAAATTTTGACAAAATTGCTGTCAATGTTTGGTGCTAATTTAATTTTAACGA
CTTATATGAATGTTCTTTATGAAGGTAGTTTTATCACAAACGTTCATGCAAATGAATTGC
TTCAGACTGGAATTTTACAACTCTTACCAGTGATTAAAGATGAAGCGGTTGCTTTAGTTG
ATGCAATTGCACCACCAGATTTTATTGTTAATTCACCACTTGGTATGAGTGATGGTGAAG
TTTATAAACATCTTGAAAATTTCATGTATCAAACACCAGACACATTCACAAGACCATCAT
GGTGGAAAGATGTTGTTTATAAGGAAAATTATTTGCCAACATCAAAACTTTAA
>g15017.t2 Gene=g15017 Length=401
MGLSFAALSGGRVGICELATTYGITAIIIAIRYSASRKQFGPDNSNIEYPVLEYQTQQYR
LIPHLASIYAVRFFSNWIGREYGKMTLKGFTGEKVSVESGMEMHAISSAGKPVSGWIVRD
CIQDCREACGGHGYLKCARLGDLRNDNDPNLTYEGENNVLIQQASNFLIAIRAKGWNSFE
NASPLGTVAFLKDGEAILRSKWNWSKIECVMKPENQLTIMNFIVAYLLEKTFNRTKSLQS
QGQSSFDVRNNSQVFHANCLAIAYGHRQIYSTFLNEIQNLPNSSSEREILTKLLSMFGAN
LILTTYMNVLYEGSFITNVHANELLQTGILQLLPVIKDEAVALVDAIAPPDFIVNSPLGM
SDGEVYKHLENFMYQTPDTFTRPSWWKDVVYKENYLPTSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15017.t2 | Gene3D | G3DSA:1.20.140.10 | - | 3 | 175 | 0 |
| 7 | g15017.t2 | Gene3D | G3DSA:1.20.140.10 | - | 214 | 347 | 0 |
| 2 | g15017.t2 | PANTHER | PTHR10909:SF315 | PEROXISOMAL ACYL-COENZYME A OXIDASE 3 | 2 | 393 | 0 |
| 3 | g15017.t2 | PANTHER | PTHR10909 | ELECTRON TRANSPORT OXIDOREDUCTASE | 2 | 393 | 0 |
| 1 | g15017.t2 | Pfam | PF01756 | Acyl-CoA oxidase | 213 | 390 | 0 |
| 4 | g15017.t2 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 3 | 179 | 0 |
| 5 | g15017.t2 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 204 | 392 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0006635 | fatty acid beta-oxidation | BP |
| GO:0003997 | acyl-CoA oxidase activity | MF |
| GO:0005777 | peroxisome | CC |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
