General information for g15017.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peroxisomal acyl-coenzyme A oxidase 3.
Parent gene
- The parent gene g15017 is located on chr_4: 3536016..3537099 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15017 | g15017.t7 | isoform | g15017.t7 | 3535820 | 3536623 |
| chr_4 | g15017 | g15017.t7 | exon | g15017.t7.exon1 | 3535820 | 3536623 |
| chr_4 | g15017 | g15017.t7 | cds | g15017.t7.CDS1 | 3535821 | 3536609 |
| chr_4 | g15017 | g15017.t7 | TSS | g15017.t7 | 3537099 | 3537099 |
| chr_4 | g15017 | g15017.t7 | TTS | g15017.t7 | NA | NA |
Sequences
>g15017.t7 Gene=g15017 Length=804
AACAACCAAAAGGAATGAAAGATCTTAATGATCCTAGATTTGCTCGTAAAGACATTTTTC
CAGACCTACATCTTCTTGATGGACCTTTACAGCAATATCGCTACAAAGCAACATTCGATT
GGCGTCAAATGAGACTTATCACTGACCCTTTACCAGTATGGGAAGTTAAATACAAAGTAT
GGGATTTTATGCAGAAAAATCCTCTTTTTGGTCGATCACATGAAACTTTACCACTTGATG
AACAACGAAAAATTGCAACAAAGCGAGCGTTTTCAATTTTTAATGAGAAAATTTTCAGCA
TTGAGCAATATTTAGAAACTCCAGAACTTGGTCAAAAATTTAGTACTGCAATTACTGCCT
TTGATCCAAGCATAAGTGTTAAAATTGGAATTGGCTTTGGAATGTTCCCAAATGTCATCA
TGTCACTTGGTAATGAAAGAGTTCAAGATTTAGTTATGGAAAATCAAAGGATGGAAAATA
TTGGTTGTTTTGCATTAACTGAAATTTCTCATGGCAGCGATTCACAAAGAATGAAAACAA
CAGCAACTTATGACCCATCAACAAAATCATTTGTGTTAAACACACCAAATTTTGAGGCTG
CAAAATGTTGGGTTGGTAACTTAGGAAAGACTGCAACGCATGCCATTGTTTATGCACAAC
TTTATACACCTGATGGAAAATGTCATGGACTTAATGCTTTTGTTGTTCCATTAAGAGATA
AAAAGACACATATGGCATTTCCTGGTGTAACTATTGGTGATTTAGGAGAGAAAATTTCTT
TAAATGGTGTCGATAATGGATTTG
>g15017.t7 Gene=g15017 Length=263
MKDLNDPRFARKDIFPDLHLLDGPLQQYRYKATFDWRQMRLITDPLPVWEVKYKVWDFMQ
KNPLFGRSHETLPLDEQRKIATKRAFSIFNEKIFSIEQYLETPELGQKFSTAITAFDPSI
SVKIGIGFGMFPNVIMSLGNERVQDLVMENQRMENIGCFALTEISHGSDSQRMKTTATYD
PSTKSFVLNTPNFEAAKCWVGNLGKTATHAIVYAQLYTPDGKCHGLNAFVVPLRDKKTHM
AFPGVTIGDLGEKISLNGVDNGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15017.t7 | Gene3D | G3DSA:2.40.110.10 | - | 157 | 263 | 0 |
| 2 | g15017.t7 | PANTHER | PTHR10909:SF315 | PEROXISOMAL ACYL-COENZYME A OXIDASE 3 | 20 | 263 | 0 |
| 3 | g15017.t7 | PANTHER | PTHR10909 | ELECTRON TRANSPORT OXIDOREDUCTASE | 20 | 263 | 0 |
| 1 | g15017.t7 | Pfam | PF02770 | Acyl-CoA dehydrogenase, middle domain | 158 | 262 | 0 |
| 4 | g15017.t7 | SUPERFAMILY | SSF56645 | Acyl-CoA dehydrogenase NM domain-like | 25 | 262 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
