General information for g15018.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 112.
Parent gene
- The parent gene g15018 is located on chr_4: 3538406..3539888 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15018 | g15018.t1 | TSS | g15018.t1 | 3538314 | 3538314 |
| chr_4 | g15018 | g15018.t1 | isoform | g15018.t1 | 3538406 | 3539888 |
| chr_4 | g15018 | g15018.t1 | exon | g15018.t1.exon1 | 3538406 | 3538510 |
| chr_4 | g15018 | g15018.t1 | cds | g15018.t1.CDS1 | 3538406 | 3538510 |
| chr_4 | g15018 | g15018.t1 | exon | g15018.t1.exon2 | 3538569 | 3539105 |
| chr_4 | g15018 | g15018.t1 | cds | g15018.t1.CDS2 | 3538569 | 3539105 |
| chr_4 | g15018 | g15018.t1 | exon | g15018.t1.exon3 | 3539175 | 3539888 |
| chr_4 | g15018 | g15018.t1 | cds | g15018.t1.CDS3 | 3539175 | 3539888 |
| chr_4 | g15018 | g15018.t1 | TTS | g15018.t1 | 3539986 | 3539986 |
Sequences
>g15018.t1 Gene=g15018 Length=1356
ATGTCAGACAATGAAAATTGTCGATTGTGTTTTGAAGAATTTAATGATCTCATTGCAATA
AATGAAGAAATTCGGGAAATTTTTTATACATTGACAAGTGTTCATTTAATAAAATCTGAC
ATTCATTCAAACTCAATCTGTTCAACTTGCTCAGAAAAACTAAAATCAACTCGCCAATAC
ATAAATTCCTTAGCAGAAAATGAACTTCAATTAATTTCACAATCACAAAAGAATTCACCT
CAAAATGATCCAATGAGAGTTGATCAAGTAATGTTAATTGAAAGTGATTCAATGTCATTG
ATTCCAGAAGTTAAAATTGAAGATGAACATGACAATTTAGATGAAGAAATTTGGCAAGAA
GAAATCAAAAGTCATCGAGAAAAATCTATAAAAAAATCGAAACCAAAAATTAAAAAACGA
AAATTGGACAAAATTGATGCTGAAATTAATGCAATGCCAATGACTGCTGATGGAAAAGTT
ACTTGTACATATTGTCAGAAATCGATATTAAAAGTTTATTACAGACAACATGTTGAGCGA
CTTCATTTGGGTCTTCATAATTATCTTTGTGATTTATGTTCCAAAAAATTTTATCGAAAA
TCTTCTATACTTTGTCATATGCATATTCATCTTAATATTAAGCCATTCAATTGCCCAAAA
CATTGTGGAAAATCTTTCTTTAGTAAAACAGCAATGCGTCTTCATGTAAAATTTCATCAT
ACAAAGCATACCGAATACATTTGTGAAGTTTGTGCTATGAGTTATAAACAACGTTATCTT
TTACTTGAACACATAGCAGCAAAACATGCTGGAGTTCGTTTTAAATGTACATATGAAGGT
TGCAGTAATGAATATCATTCACAATCAGCACTTCGAAAGCATATTGACAGCATTCATGAA
TCTGTATTGGTTGCATGCGAATATTGTGGTGATAAATTTCGAACTGGTTTTTCACTATAT
CAACATAAACGACTTAATCATTCTGGAAGACGTTTTCCATGTACTGCTGAGGGTTGCACA
AAAACTTTTGCAACTGCAAGCAAACTTAAAACTCATACAAAAATGCATACAGGCACAAAA
GATTTTATTTGTCATATTTGCAATGCAAGTTATCATATAAAAAGAAATCTTGGTCGACAT
ATTCAAGTTGTACATAAAAAATCGAGATTCTTTTGTGAAATTCTTGGTTGCAATGCATCA
CTTTGTAATAAAGACAATTATAGAGCACACATGAAAAAAGTTCATGCAAATTTGCCATCA
CATGAAATGGATAAAATGCTTGAAAATATTGCTAAAATGAAACCAGTGTTTTTAGATGAT
GATGAAGAATATGATCAAGATGGTGTGACTGTTTAA
>g15018.t1 Gene=g15018 Length=451
MSDNENCRLCFEEFNDLIAINEEIREIFYTLTSVHLIKSDIHSNSICSTCSEKLKSTRQY
INSLAENELQLISQSQKNSPQNDPMRVDQVMLIESDSMSLIPEVKIEDEHDNLDEEIWQE
EIKSHREKSIKKSKPKIKKRKLDKIDAEINAMPMTADGKVTCTYCQKSILKVYYRQHVER
LHLGLHNYLCDLCSKKFYRKSSILCHMHIHLNIKPFNCPKHCGKSFFSKTAMRLHVKFHH
TKHTEYICEVCAMSYKQRYLLLEHIAAKHAGVRFKCTYEGCSNEYHSQSALRKHIDSIHE
SVLVACEYCGDKFRTGFSLYQHKRLNHSGRRFPCTAEGCTKTFATASKLKTHTKMHTGTK
DFICHICNASYHIKRNLGRHIQVVHKKSRFFCEILGCNASLCNKDNYRAHMKKVHANLPS
HEMDKMLENIAKMKPVFLDDDEEYDQDGVTV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 32 | g15018.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 119 | 213 | 4.0E-8 |
| 31 | g15018.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 214 | 275 | 6.5E-9 |
| 34 | g15018.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 276 | 301 | 3.0E-5 |
| 33 | g15018.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 302 | 355 | 1.7E-9 |
| 30 | g15018.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 356 | 426 | 8.3E-10 |
| 2 | g15018.t1 | PANTHER | PTHR24384:SF200 | ZINC FINGER PROTEIN 977 | 157 | 335 | 1.7E-45 |
| 4 | g15018.t1 | PANTHER | PTHR24384 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED | 157 | 335 | 1.7E-45 |
| 3 | g15018.t1 | PANTHER | PTHR24384:SF200 | ZINC FINGER PROTEIN 977 | 220 | 417 | 1.7E-45 |
| 5 | g15018.t1 | PANTHER | PTHR24384 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED | 220 | 417 | 1.7E-45 |
| 1 | g15018.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 332 | 356 | 7.2E-4 |
| 27 | g15018.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 190 | 210 | - |
| 25 | g15018.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 218 | 240 | - |
| 23 | g15018.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 248 | 269 | - |
| 24 | g15018.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 276 | 299 | - |
| 28 | g15018.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 306 | 327 | - |
| 22 | g15018.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 334 | 356 | - |
| 29 | g15018.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 364 | 385 | - |
| 26 | g15018.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 392 | 415 | - |
| 40 | g15018.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 188 | 215 | 12.424 |
| 36 | g15018.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 216 | 245 | 11.468 |
| 38 | g15018.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 246 | 274 | 9.245 |
| 41 | g15018.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 274 | 299 | 8.746 |
| 39 | g15018.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 304 | 332 | 11.593 |
| 37 | g15018.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 332 | 361 | 12.986 |
| 35 | g15018.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 362 | 390 | 9.182 |
| 12 | g15018.t1 | SMART | SM00868 | zf_AD_2 | 6 | 74 | 0.0018 |
| 14 | g15018.t1 | SMART | SM00355 | c2h2final6 | 160 | 182 | 47.0 |
| 13 | g15018.t1 | SMART | SM00355 | c2h2final6 | 188 | 210 | 2.7 |
| 16 | g15018.t1 | SMART | SM00355 | c2h2final6 | 216 | 240 | 2.1 |
| 15 | g15018.t1 | SMART | SM00355 | c2h2final6 | 246 | 269 | 0.038 |
| 20 | g15018.t1 | SMART | SM00355 | c2h2final6 | 274 | 299 | 0.0063 |
| 21 | g15018.t1 | SMART | SM00355 | c2h2final6 | 304 | 327 | 0.63 |
| 18 | g15018.t1 | SMART | SM00355 | c2h2final6 | 332 | 356 | 0.0062 |
| 19 | g15018.t1 | SMART | SM00355 | c2h2final6 | 362 | 385 | 0.22 |
| 17 | g15018.t1 | SMART | SM00355 | c2h2final6 | 390 | 415 | 0.0059 |
| 6 | g15018.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 6 | 71 | 7.84E-7 |
| 8 | g15018.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 161 | 210 | 5.19E-6 |
| 10 | g15018.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 197 | 253 | 9.66E-10 |
| 11 | g15018.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 254 | 313 | 1.2E-5 |
| 9 | g15018.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 313 | 370 | 2.19E-11 |
| 7 | g15018.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 360 | 412 | 4.12E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
