Gene loci information

Transcript annotation

  • This transcript has been annotated as Diacylglycerol O-acyltransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15028 g15028.t14 TTS g15028.t14 3587251 3587251
chr_4 g15028 g15028.t14 isoform g15028.t14 3587549 3590717
chr_4 g15028 g15028.t14 exon g15028.t14.exon1 3587549 3587768
chr_4 g15028 g15028.t14 cds g15028.t14.CDS1 3587551 3587768
chr_4 g15028 g15028.t14 exon g15028.t14.exon2 3587838 3588375
chr_4 g15028 g15028.t14 cds g15028.t14.CDS2 3587838 3588375
chr_4 g15028 g15028.t14 exon g15028.t14.exon3 3588438 3588611
chr_4 g15028 g15028.t14 cds g15028.t14.CDS3 3588438 3588611
chr_4 g15028 g15028.t14 exon g15028.t14.exon4 3588700 3588752
chr_4 g15028 g15028.t14 cds g15028.t14.CDS4 3588700 3588752
chr_4 g15028 g15028.t14 exon g15028.t14.exon5 3588818 3589041
chr_4 g15028 g15028.t14 cds g15028.t14.CDS5 3588818 3589041
chr_4 g15028 g15028.t14 exon g15028.t14.exon6 3589409 3589551
chr_4 g15028 g15028.t14 cds g15028.t14.CDS6 3589409 3589536
chr_4 g15028 g15028.t14 exon g15028.t14.exon7 3590541 3590717
chr_4 g15028 g15028.t14 TSS g15028.t14 3590713 3590713

Sequences

>g15028.t14 Gene=g15028 Length=1529
AATTAGTTCTATGTGAAACTTCCGAGTGTAAAGTTGTTGATTATTTGGTTTCCTCGCGTG
TTCGTCTTTTATTTATTTCTAATCTATTTTATTTATTTAAATTTTGTAAAAGTTATTATT
TGGTTCAAAATAAATAGTCTTTGTTAAGTGTGCGTAATTGTGAAAAAAGTGAACAAGTTT
AATAGAAATATTATGGCACCGTCTGAGAGCAATTGTAATGGTGAATTAAAAACGCGTCTG
AGACGAACACAAAGCGTAACACGTGCTGAAGAGATCACTGATCAAGAGCAAAAGCAAAGA
AAGAGTCAACCAGATAAACCAGTACACAAGCCACGAGATTCTCTTTTTTCGTGGAGTTCA
AATTTCAATGATTTTAGTGGTTTGGTGAATTGGGGATTTCTTTTATTGACAATGGGAGGC
ATCAGATTGCTACTAGAAAATTTTATAAAATATGGATTTCGAGTTGATCCAGTACAATGG
CTAATTGTACTGAGTGGAAAAAATGAAGGAGATTCATCTTATCCATCGGTTGTTCTAGCT
TTATATTCAAGTGTGCCAATTGTTTTATGTATTATTATTGAAAAAGGACTTTCTGTGGAG
ATTATTCCAGAAACAACAGGCAAATTTGCACACGTGTTTAACTTGATTGCAGTAGTTCTT
TTGCCAATCGTTGTAATTAATTTACGTGGAACTTCATTTAGTTTGATGGGGTCAACATTT
GTCTGTTTTTTGTACTGTATACTTTTTGTAAAATTATGGAGTTATGTGCAGGTCAATTTA
TGGTGTCGTCAAAATCAAAAGAATCAAAAAGTGTCAATTTCGGGAAAGAGACGAGAAAGT
TTTAGTATAGCAGAATTTGAAAGAAAACATCATAGAAACAGCAATACAGATCAAAATGAA
AATTTTATTGCTAATGATACAAAAGACCATGAACCACTGAAATTGATAGAGTATCCTGAT
AATTTAAATCTTCGTGATCTTATCTATTTTCTTCTTGCGCCAACATTATGTTATGAATTA
AATTTCCCAAGAACAACTCGAATTCGTAAACGGTTTTTAATCAAAAGAATTTTAGAAGTA
GTTGTCGGAGTTAATATTGTCATGGCACTTTTTCAACAATGGATGATACCAAGTGTTAAA
AATTCTCTTATTCCTTTCTCAAATATGGAATTTACAAAAGCAACTGAACGTGTATTGAAG
CTTGCTATTCCAAATCATTTTATATGGCTGTGTGGGTTCTATCTAATTTTTCATTCAACC
CTTAATCTTCTTGGTGAAATTTTACATTTTGCTGATCGCAATTTTTACTGTGACTGGTGG
AACGCAAATAACGTTGATACATTTTGGAAAACATGGAATATGCCTGTCCATCGTTGGTGT
GTGAGACATTTATATATTCCACTTGTTGATATGGGATATAGTCGTTTTGCTGCTTCTGGA
GTTGTTTTTTTCATTAGTGCCTTCTTCCACGAATATTTGGTATCAGTTCCTCTTCGAACA
TTTAAAATTTGGGCTTTTATGGGAATGGT

>g15028.t14 Gene=g15028 Length=445
MAPSESNCNGELKTRLRRTQSVTRAEEITDQEQKQRKSQPDKPVHKPRDSLFSWSSNFND
FSGLVNWGFLLLTMGGIRLLLENFIKYGFRVDPVQWLIVLSGKNEGDSSYPSVVLALYSS
VPIVLCIIIEKGLSVEIIPETTGKFAHVFNLIAVVLLPIVVINLRGTSFSLMGSTFVCFL
YCILFVKLWSYVQVNLWCRQNQKNQKVSISGKRRESFSIAEFERKHHRNSNTDQNENFIA
NDTKDHEPLKLIEYPDNLNLRDLIYFLLAPTLCYELNFPRTTRIRKRFLIKRILEVVVGV
NIVMALFQQWMIPSVKNSLIPFSNMEFTKATERVLKLAIPNHFIWLCGFYLIFHSTLNLL
GEILHFADRNFYCDWWNANNVDTFWKTWNMPVHRWCVRHLYIPLVDMGYSRFAASGVVFF
ISAFFHEYLVSVPLRTFKIWAFMGM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g15028.t14 MobiDBLite mobidb-lite consensus disorder prediction 1 16 -
11 g15028.t14 MobiDBLite mobidb-lite consensus disorder prediction 1 46 -
12 g15028.t14 MobiDBLite mobidb-lite consensus disorder prediction 17 46 -
2 g15028.t14 PANTHER PTHR10408:SF7 DIACYLGLYCEROL O-ACYLTRANSFERASE 1 17 445 1.1E-134
3 g15028.t14 PANTHER PTHR10408 STEROL O-ACYLTRANSFERASE 17 445 1.1E-134
30 g15028.t14 PIRSF PIRSF000439 Oat_ACAT_DAG_ARE 2 445 2.4E-125
1 g15028.t14 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 167 443 5.2E-31
20 g15028.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 60 -
28 g15028.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 61 81 -
14 g15028.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 82 112 -
26 g15028.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 113 133 -
21 g15028.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 134 144 -
27 g15028.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 145 164 -
16 g15028.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 165 170 -
25 g15028.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 171 192 -
19 g15028.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 193 262 -
24 g15028.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 263 281 -
15 g15028.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 282 292 -
29 g15028.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 293 312 -
18 g15028.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 313 342 -
22 g15028.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 343 361 -
13 g15028.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 362 407 -
23 g15028.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 408 425 -
17 g15028.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 426 445 -
4 g15028.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 64 81 -
7 g15028.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 145 164 -
5 g15028.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 169 191 -
9 g15028.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 293 312 -
8 g15028.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 342 364 -
6 g15028.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 408 430 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004144 diacylglycerol O-acyltransferase activity MF
GO:0019432 triglyceride biosynthetic process BP
GO:0008374 O-acyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values