Gene loci information

Transcript annotation

  • This transcript has been annotated as Diacylglycerol O-acyltransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15028 g15028.t2 TTS g15028.t2 3587251 3587251
chr_4 g15028 g15028.t2 isoform g15028.t2 3587302 3588015
chr_4 g15028 g15028.t2 exon g15028.t2.exon1 3587302 3587487
chr_4 g15028 g15028.t2 cds g15028.t2.CDS1 3587302 3587487
chr_4 g15028 g15028.t2 exon g15028.t2.exon2 3587551 3587768
chr_4 g15028 g15028.t2 cds g15028.t2.CDS2 3587551 3587768
chr_4 g15028 g15028.t2 exon g15028.t2.exon3 3587838 3588015
chr_4 g15028 g15028.t2 cds g15028.t2.CDS3 3587838 3587982
chr_4 g15028 g15028.t2 TSS g15028.t2 NA NA

Sequences

>g15028.t2 Gene=g15028 Length=582
AGTGTTAAAAATTCTCTTATTCCTTTCTCAAATATGGAATTTACAAAAGCAACTGAACGT
GTATTGAAGCTTGCTATTCCAAATCATTTTATATGGCTGTGTGGGTTCTATCTAATTTTT
CATTCAACCCTTAATCTTCTTGGTGAAATTTTACATTTTGCTGATCGCAATTTTTACTGT
GACTGGTGGAACGCAAATAACGTTGATACATTTTGGAAAACATGGAATATGCCTGTCCAT
CGTTGGTGTGTGAGACATTTATATATTCCACTTGTTGATATGGGATATAGTCGTTTTGCT
GCTTCTGGAGTTGTTTTTTTCATTAGTGCCTTCTTCCACGAATATTTGGTATCAGTTCCT
CTTCGAACATTTAAAATTTGGGCTTTTATGGGAATGGTTTCGCAGTTACCTCTTTCTTAT
GTATCAAAATTTCTCGAAAAAAATGTAGGAGAAAGATGGGGAAATATTTTAGTATGGGGA
AGTTTAATTTTAGGGCAACCACTGTGTATCATGGTCTATTATCATGACTATGTCATCCAA
AATTATAATAAAGTTATACTTGAACCTGAATATTTAGAATAG

>g15028.t2 Gene=g15028 Length=182
MEFTKATERVLKLAIPNHFIWLCGFYLIFHSTLNLLGEILHFADRNFYCDWWNANNVDTF
WKTWNMPVHRWCVRHLYIPLVDMGYSRFAASGVVFFISAFFHEYLVSVPLRTFKIWAFMG
MVSQLPLSYVSKFLEKNVGERWGNILVWGSLILGQPLCIMVYYHDYVIQNYNKVILEPEY
LE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g15028.t2 PANTHER PTHR10408:SF7 DIACYLGLYCEROL O-ACYLTRANSFERASE 1 3 170 2.1E-79
3 g15028.t2 PANTHER PTHR10408 STEROL O-ACYLTRANSFERASE 3 170 2.1E-79
1 g15028.t2 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 11 162 8.7E-22
10 g15028.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 18 -
12 g15028.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 19 37 -
7 g15028.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 38 83 -
14 g15028.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 84 101 -
11 g15028.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 102 112 -
15 g15028.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 113 130 -
8 g15028.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 131 141 -
13 g15028.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 142 163 -
9 g15028.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 164 182 -
4 g15028.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -
6 g15028.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 88 110 -
5 g15028.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 142 164 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004144 diacylglycerol O-acyltransferase activity MF
GO:0019432 triglyceride biosynthetic process BP
GO:0008374 O-acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values