Gene loci information

Transcript annotation

  • This transcript has been annotated as Diacylglycerol O-acyltransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15028 g15028.t6 TTS g15028.t6 3587251 3587251
chr_4 g15028 g15028.t6 isoform g15028.t6 3587302 3589027
chr_4 g15028 g15028.t6 exon g15028.t6.exon1 3587302 3587487
chr_4 g15028 g15028.t6 cds g15028.t6.CDS1 3587302 3587487
chr_4 g15028 g15028.t6 exon g15028.t6.exon2 3587551 3587768
chr_4 g15028 g15028.t6 cds g15028.t6.CDS2 3587551 3587768
chr_4 g15028 g15028.t6 exon g15028.t6.exon3 3587838 3588375
chr_4 g15028 g15028.t6 cds g15028.t6.CDS3 3587838 3588375
chr_4 g15028 g15028.t6 exon g15028.t6.exon4 3588438 3588611
chr_4 g15028 g15028.t6 cds g15028.t6.CDS4 3588438 3588611
chr_4 g15028 g15028.t6 exon g15028.t6.exon5 3588700 3588752
chr_4 g15028 g15028.t6 cds g15028.t6.CDS5 3588700 3588752
chr_4 g15028 g15028.t6 exon g15028.t6.exon6 3588818 3589027
chr_4 g15028 g15028.t6 cds g15028.t6.CDS6 3588818 3588950
chr_4 g15028 g15028.t6 TSS g15028.t6 NA NA

Sequences

>g15028.t6 Gene=g15028 Length=1379
GAGATTCTCTTTTTTCGTGGAGTTCAAATTTCAATGATTTTAGTGGTTTGGTGAATTGGG
GATTTCTTTTATTGACAATGGGAGGCATCAGATTGCTACTAGAAAATTTTATAAAATATG
GATTTCGAGTTGATCCAGTACAATGGCTAATTGTACTGAGTGGAAAAAATGAAGGAGATT
CATCTTATCCATCGGTTGTTCTAGCTTTATATTCAAGTGTGCCAATTGTTTTATGTATTA
TTATTGAAAAAGGACTTTCTGTGGAGATTATTCCAGAAACAACAGGCAAATTTGCACACG
TGTTTAACTTGATTGCAGTAGTTCTTTTGCCAATCGTTGTAATTAATTTACGTGGAACTT
CATTTAGTTTGATGGGGTCAACATTTGTCTGTTTTTTGTACTGTATACTTTTTGTAAAAT
TATGGAGTTATGTGCAGGTCAATTTATGGTGTCGTCAAAATCAAAAGAATCAAAAAGTGT
CAATTTCGGGAAAGAGACGAGAAAGTTTTAGTATAGCAGAATTTGAAAGAAAACATCATA
GAAACAGCAATACAGATCAAAATGAAAATTTTATTGCTAATGATACAAAAGACCATGAAC
CACTGAAATTGATAGAGTATCCTGATAATTTAAATCTTCGTGATCTTATCTATTTTCTTC
TTGCGCCAACATTATGTTATGAATTAAATTTCCCAAGAACAACTCGAATTCGTAAACGGT
TTTTAATCAAAAGAATTTTAGAAGTAGTTGTCGGAGTTAATATTGTCATGGCACTTTTTC
AACAATGGATGATACCAAGTGTTAAAAATTCTCTTATTCCTTTCTCAAATATGGAATTTA
CAAAAGCAACTGAACGTGTATTGAAGCTTGCTATTCCAAATCATTTTATATGGCTGTGTG
GGTTCTATCTAATTTTTCATTCAACCCTTAATCTTCTTGGTGAAATTTTACATTTTGCTG
ATCGCAATTTTTACTGTGACTGGTGGAACGCAAATAACGTTGATACATTTTGGAAAACAT
GGAATATGCCTGTCCATCGTTGGTGTGTGAGACATTTATATATTCCACTTGTTGATATGG
GATATAGTCGTTTTGCTGCTTCTGGAGTTGTTTTTTTCATTAGTGCCTTCTTCCACGAAT
ATTTGGTATCAGTTCCTCTTCGAACATTTAAAATTTGGGCTTTTATGGGAATGGTTTCGC
AGTTACCTCTTTCTTATGTATCAAAATTTCTCGAAAAAAATGTAGGAGAAAGATGGGGAA
ATATTTTAGTATGGGGAAGTTTAATTTTAGGGCAACCACTGTGTATCATGGTCTATTATC
ATGACTATGTCATCCAAAATTATAATAAAGTTATACTTGAACCTGAATATTTAGAATAG

>g15028.t6 Gene=g15028 Length=433
MGGIRLLLENFIKYGFRVDPVQWLIVLSGKNEGDSSYPSVVLALYSSVPIVLCIIIEKGL
SVEIIPETTGKFAHVFNLIAVVLLPIVVINLRGTSFSLMGSTFVCFLYCILFVKLWSYVQ
VNLWCRQNQKNQKVSISGKRRESFSIAEFERKHHRNSNTDQNENFIANDTKDHEPLKLIE
YPDNLNLRDLIYFLLAPTLCYELNFPRTTRIRKRFLIKRILEVVVGVNIVMALFQQWMIP
SVKNSLIPFSNMEFTKATERVLKLAIPNHFIWLCGFYLIFHSTLNLLGEILHFADRNFYC
DWWNANNVDTFWKTWNMPVHRWCVRHLYIPLVDMGYSRFAASGVVFFISAFFHEYLVSVP
LRTFKIWAFMGMVSQLPLSYVSKFLEKNVGERWGNILVWGSLILGQPLCIMVYYHDYVIQ
NYNKVILEPEYLE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g15028.t6 PANTHER PTHR10408:SF7 DIACYLGLYCEROL O-ACYLTRANSFERASE 1 4 421 1.0E-139
3 g15028.t6 PANTHER PTHR10408 STEROL O-ACYLTRANSFERASE 4 421 1.0E-139
28 g15028.t6 PIRSF PIRSF000439 Oat_ACAT_DAG_ARE 1 424 1.2E-126
29 g15028.t6 PIRSF PIRSF500231 Oat_dag 1 425 9.8E-160
1 g15028.t6 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 94 413 2.0E-31
15 g15028.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 39 -
24 g15028.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 40 60 -
11 g15028.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 61 71 -
26 g15028.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 72 91 -
19 g15028.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 92 96 -
20 g15028.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 97 119 -
13 g15028.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 120 219 -
21 g15028.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 220 239 -
18 g15028.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 240 269 -
25 g15028.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 270 288 -
14 g15028.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 289 334 -
22 g15028.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 335 352 -
17 g15028.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 353 363 -
23 g15028.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 364 381 -
12 g15028.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 382 392 -
27 g15028.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 393 414 -
16 g15028.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 415 433 -
9 g15028.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 40 62 -
10 g15028.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 74 91 -
8 g15028.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 96 118 -
6 g15028.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 220 239 -
7 g15028.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 269 291 -
5 g15028.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 335 357 -
4 g15028.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 393 415 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004144 diacylglycerol O-acyltransferase activity MF
GO:0019432 triglyceride biosynthetic process BP
GO:0008374 O-acyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values