General information for g1505.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Histone acetyltransferase type B catalytic subunit.
Parent gene
- The parent gene g1505 is located on chr_3: 11439495..11440715 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1505 | g1505.t1 | TSS | g1505.t1 | 11439150 | 11439150 |
| chr_3 | g1505 | g1505.t1 | isoform | g1505.t1 | 11439372 | 11440624 |
| chr_3 | g1505 | g1505.t1 | exon | g1505.t1.exon1 | 11439372 | 11439429 |
| chr_3 | g1505 | g1505.t1 | cds | g1505.t1.CDS1 | 11439372 | 11439429 |
| chr_3 | g1505 | g1505.t1 | exon | g1505.t1.exon2 | 11439495 | 11440624 |
| chr_3 | g1505 | g1505.t1 | cds | g1505.t1.CDS2 | 11439495 | 11440624 |
| chr_3 | g1505 | g1505.t1 | TTS | g1505.t1 | 11440713 | 11440713 |
Sequences
>g1505.t1 Gene=g1505 Length=1188
ATGTCAAATCTGGAGAATTTTGTTGTTGAGGCTAGTGAAGCCATTAATTTCAAACTAATC
AGAAATCGAGGTGATGTGAATAAACTGGATGATATTTTTAAACCAGAAATGACTCATCAA
TCTTTCGGTGATTCGGAAAGCATTTTTGGATATCGAGACTTGCAAATAAATGTATATTAC
TCAGCTGGGCCATTGGATATTTATTATGATAAGAAATATAGCAAACGAGTTGATGATCTC
TCAAATAATCAAGGACTGAAAGCTGATAATGTTGATGTTATTACTGAAGTCTTTTCTGAA
GGATATTACACTAATTTAGATGAATTTCTCGATGTAATGGAAAAGAAAGAGAAGACTTTT
GCACCTATGGGTGAGCGTATTCATGAATTCAAGACAGACGATAATCGCACATTCGAAATT
TATCTTTGCGAATCCTCAACACCAAATTTCCAGAAATACTACACTCGTTTGGAATCATTC
ATTTTCTGGTATATTGATGCATCAAGCAGAATTGAACATGATGAAAAATGGAGATTCTTT
GTTGTGTTTGAAAAATATAAGAATGAAGCTGGTGAAGATCGATATGCAAGCGTTGGCTAT
AGCTCTGTCTATCTTTACTTTTGTTATCCTGATAAAATTCGTCCTAGAATCGCTCAATTC
ATTATTTTACCTCCATTCCAACGTAAAGGAATCGGAAGTGAACTTCTGATGACAATTTAC
AAGCATTTTCAAGCAAAAGACAATGTTTGCGATATTACAGTCGAAGATGCATCAGAAGAT
TTTCAAAGACTTCGTAATATCAATGATGCTAAATTACTCAAAAATCTTGATTCATTCTCA
CCAGAAAATCTTAAGAATGGTTTCAATACAAAAATGGCACAAGAAGCGAAAGATAAGTTC
AAAATCAACGCAAAGCAATCGAGGATCATTTATGAAATTCTTCGTTTAGGCATCACAAAC
ACATCAAATAAAAATGAATATAAAGCTTATCGTTTGGAAGTTAAAAAACGTCTCAATATG
AACTATTTGAAGGAAAAACGCGATTTGAATCGTGTCATCAGCCGAGGTTTTAAAATTACA
GCAGATAAAAAACTTTCATTACCAAGTACTGAAGAAAATATTGAATCACTTGAAGGAATG
TATCGTGAAACAGAAGACTACTATCGTCAAGTCTTGGAAAAAGTTTAA
>g1505.t1 Gene=g1505 Length=395
MSNLENFVVEASEAINFKLIRNRGDVNKLDDIFKPEMTHQSFGDSESIFGYRDLQINVYY
SAGPLDIYYDKKYSKRVDDLSNNQGLKADNVDVITEVFSEGYYTNLDEFLDVMEKKEKTF
APMGERIHEFKTDDNRTFEIYLCESSTPNFQKYYTRLESFIFWYIDASSRIEHDEKWRFF
VVFEKYKNEAGEDRYASVGYSSVYLYFCYPDKIRPRIAQFIILPPFQRKGIGSELLMTIY
KHFQAKDNVCDITVEDASEDFQRLRNINDAKLLKNLDSFSPENLKNGFNTKMAQEAKDKF
KINAKQSRIIYEILRLGITNTSNKNEYKAYRLEVKKRLNMNYLKEKRDLNRVISRGFKIT
ADKKLSLPSTEENIESLEGMYRETEDYYRQVLEKV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g1505.t1 | CDD | cd04301 | NAT_SF | 198 | 246 | 0.0001852 |
| 6 | g1505.t1 | Gene3D | G3DSA:3.90.360.10 | Histone Acetyltransferase; Domain 1 | 13 | 166 | 0.0000000 |
| 5 | g1505.t1 | Gene3D | G3DSA:3.40.630.30 | - | 121 | 265 | 0.0000000 |
| 7 | g1505.t1 | Gene3D | G3DSA:1.10.10.390 | - | 268 | 320 | 0.0000000 |
| 2 | g1505.t1 | PANTHER | PTHR12046 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT | 6 | 395 | 0.0000000 |
| 3 | g1505.t1 | PANTHER | PTHR12046:SF0 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT | 6 | 395 | 0.0000000 |
| 8 | g1505.t1 | PIRSF | PIRSF038084 | HAT1 | 1 | 395 | 0.0000000 |
| 1 | g1505.t1 | Pfam | PF10394 | Histone acetyl transferase HAT1 N-terminus | 8 | 166 | 0.0000000 |
| 4 | g1505.t1 | SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 5 | 316 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042393 | histone binding | MF |
| GO:0005634 | nucleus | CC |
| GO:0006325 | chromatin organization | BP |
| GO:0004402 | histone acetyltransferase activity | MF |
| GO:0016573 | histone acetylation | BP |
| GO:0006348 | NA | NA |
KEGG
Orthology
- This transcript has been annotated with K11303 (histone acetyltransferase 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
