General information for g1505.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Histone acetyltransferase type B catalytic subunit.
Parent gene
- The parent gene g1505 is located on chr_3: 11439495..11440715 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1505 | g1505.t2 | TSS | g1505.t2 | 11439150 | 11439150 |
| chr_3 | g1505 | g1505.t2 | isoform | g1505.t2 | 11439372 | 11440715 |
| chr_3 | g1505 | g1505.t2 | exon | g1505.t2.exon1 | 11439372 | 11439433 |
| chr_3 | g1505 | g1505.t2 | exon | g1505.t2.exon2 | 11439495 | 11440601 |
| chr_3 | g1505 | g1505.t2 | cds | g1505.t2.CDS1 | 11439545 | 11440601 |
| chr_3 | g1505 | g1505.t2 | exon | g1505.t2.exon3 | 11440666 | 11440715 |
| chr_3 | g1505 | g1505.t2 | cds | g1505.t2.CDS2 | 11440666 | 11440694 |
| chr_3 | g1505 | g1505.t2 | TTS | g1505.t2 | 11440713 | 11440713 |
Sequences
>g1505.t2 Gene=g1505 Length=1219
ATGTCAAATCTGGAGAATTTTGTTGTTGAGGCTAGTGAAGCCATTAATTTCAAACTAAGT
AATCAGAAATCGAGGTGATGTGAATAAACTGGATGATATTTTTAAACCAGAAATGACTCA
TCAATCTTTCGGTGATTCGGAAAGCATTTTTGGATATCGAGACTTGCAAATAAATGTATA
TTACTCAGCTGGGCCATTGGATATTTATTATGATAAGAAATATAGCAAACGAGTTGATGA
TCTCTCAAATAATCAAGGACTGAAAGCTGATAATGTTGATGTTATTACTGAAGTCTTTTC
TGAAGGATATTACACTAATTTAGATGAATTTCTCGATGTAATGGAAAAGAAAGAGAAGAC
TTTTGCACCTATGGGTGAGCGTATTCATGAATTCAAGACAGACGATAATCGCACATTCGA
AATTTATCTTTGCGAATCCTCAACACCAAATTTCCAGAAATACTACACTCGTTTGGAATC
ATTCATTTTCTGGTATATTGATGCATCAAGCAGAATTGAACATGATGAAAAATGGAGATT
CTTTGTTGTGTTTGAAAAATATAAGAATGAAGCTGGTGAAGATCGATATGCAAGCGTTGG
CTATAGCTCTGTCTATCTTTACTTTTGTTATCCTGATAAAATTCGTCCTAGAATCGCTCA
ATTCATTATTTTACCTCCATTCCAACGTAAAGGAATCGGAAGTGAACTTCTGATGACAAT
TTACAAGCATTTTCAAGCAAAAGACAATGTTTGCGATATTACAGTCGAAGATGCATCAGA
AGATTTTCAAAGACTTCGTAATATCAATGATGCTAAATTACTCAAAAATCTTGATTCATT
CTCACCAGAAAATCTTAAGAATGGTTTCAATACAAAAATGGCACAAGAAGCGAAAGATAA
GTTCAAAATCAACGCAAAGCAATCGAGGATCATTTATGAAATTCTTCGTTTAGGCATCAC
AAACACATCAAATAAAAATGAATATAAAGCTTATCGTTTGGAAGTTAAAAAACGTCTCAA
TATGAACTATTTGAAGGAAAAACGCGATTTGAATCGTGTCATCAGCCGAGGTTTTAAAAT
TACAGCAGATAAAAAACTTTCATTACCAAGTACTGAAGAAAATATTGAATCACTTGAAGG
AATGTATCGTGAAACAGAAGACTACTATCTTTATAAAAAAGTATCAAATAAAATGTGAAA
CTCAAGAATAAAATTTCTT
>g1505.t2 Gene=g1505 Length=361
MTHQSFGDSESIFGYRDLQINVYYSAGPLDIYYDKKYSKRVDDLSNNQGLKADNVDVITE
VFSEGYYTNLDEFLDVMEKKEKTFAPMGERIHEFKTDDNRTFEIYLCESSTPNFQKYYTR
LESFIFWYIDASSRIEHDEKWRFFVVFEKYKNEAGEDRYASVGYSSVYLYFCYPDKIRPR
IAQFIILPPFQRKGIGSELLMTIYKHFQAKDNVCDITVEDASEDFQRLRNINDAKLLKNL
DSFSPENLKNGFNTKMAQEAKDKFKINAKQSRIIYEILRLGITNTSNKNEYKAYRLEVKK
RLNMNYLKEKRDLNRVISRGFKITADKKLSLPSTEENIESLEGMYRETEDYYLYKKVSNK
M
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1505.t2 | CDD | cd04301 | NAT_SF | 162 | 210 | 0.0001684 |
| 6 | g1505.t2 | Gene3D | G3DSA:3.90.360.10 | Histone Acetyltransferase; Domain 1 | 1 | 130 | 0.0000000 |
| 5 | g1505.t2 | Gene3D | G3DSA:3.40.630.30 | - | 85 | 229 | 0.0000000 |
| 7 | g1505.t2 | Gene3D | G3DSA:1.10.10.390 | - | 232 | 284 | 0.0000000 |
| 2 | g1505.t2 | PANTHER | PTHR12046 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT | 1 | 352 | 0.0000000 |
| 3 | g1505.t2 | PANTHER | PTHR12046:SF0 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT | 1 | 352 | 0.0000000 |
| 1 | g1505.t2 | Pfam | PF10394 | Histone acetyl transferase HAT1 N-terminus | 1 | 130 | 0.0000000 |
| 4 | g1505.t2 | SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1 | 280 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042393 | histone binding | MF |
| GO:0005634 | nucleus | CC |
| GO:0006325 | chromatin organization | BP |
| GO:0004402 | histone acetyltransferase activity | MF |
| GO:0016573 | histone acetylation | BP |
| GO:0006348 | NA | NA |
KEGG
Orthology
- This transcript has been annotated with K11303 (histone acetyltransferase 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed