Gene loci information

Transcript annotation

  • This transcript has been annotated as Histone acetyltransferase type B catalytic subunit.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1505 g1505.t3 TSS g1505.t3 11439150 11439150
chr_3 g1505 g1505.t3 isoform g1505.t3 11439495 11440601
chr_3 g1505 g1505.t3 exon g1505.t3.exon1 11439495 11440601
chr_3 g1505 g1505.t3 cds g1505.t3.CDS1 11439545 11440600
chr_3 g1505 g1505.t3 TTS g1505.t3 11440713 11440713

Sequences

>g1505.t3 Gene=g1505 Length=1107
TCAGAAATCGAGGTGATGTGAATAAACTGGATGATATTTTTAAACCAGAAATGACTCATC
AATCTTTCGGTGATTCGGAAAGCATTTTTGGATATCGAGACTTGCAAATAAATGTATATT
ACTCAGCTGGGCCATTGGATATTTATTATGATAAGAAATATAGCAAACGAGTTGATGATC
TCTCAAATAATCAAGGACTGAAAGCTGATAATGTTGATGTTATTACTGAAGTCTTTTCTG
AAGGATATTACACTAATTTAGATGAATTTCTCGATGTAATGGAAAAGAAAGAGAAGACTT
TTGCACCTATGGGTGAGCGTATTCATGAATTCAAGACAGACGATAATCGCACATTCGAAA
TTTATCTTTGCGAATCCTCAACACCAAATTTCCAGAAATACTACACTCGTTTGGAATCAT
TCATTTTCTGGTATATTGATGCATCAAGCAGAATTGAACATGATGAAAAATGGAGATTCT
TTGTTGTGTTTGAAAAATATAAGAATGAAGCTGGTGAAGATCGATATGCAAGCGTTGGCT
ATAGCTCTGTCTATCTTTACTTTTGTTATCCTGATAAAATTCGTCCTAGAATCGCTCAAT
TCATTATTTTACCTCCATTCCAACGTAAAGGAATCGGAAGTGAACTTCTGATGACAATTT
ACAAGCATTTTCAAGCAAAAGACAATGTTTGCGATATTACAGTCGAAGATGCATCAGAAG
ATTTTCAAAGACTTCGTAATATCAATGATGCTAAATTACTCAAAAATCTTGATTCATTCT
CACCAGAAAATCTTAAGAATGGTTTCAATACAAAAATGGCACAAGAAGCGAAAGATAAGT
TCAAAATCAACGCAAAGCAATCGAGGATCATTTATGAAATTCTTCGTTTAGGCATCACAA
ACACATCAAATAAAAATGAATATAAAGCTTATCGTTTGGAAGTTAAAAAACGTCTCAATA
TGAACTATTTGAAGGAAAAACGCGATTTGAATCGTGTCATCAGCCGAGGTTTTAAAATTA
CAGCAGATAAAAAACTTTCATTACCAAGTACTGAAGAAAATATTGAATCACTTGAAGGAA
TGTATCGTGAAACAGAAGACTACTATC

>g1505.t3 Gene=g1505 Length=352
MTHQSFGDSESIFGYRDLQINVYYSAGPLDIYYDKKYSKRVDDLSNNQGLKADNVDVITE
VFSEGYYTNLDEFLDVMEKKEKTFAPMGERIHEFKTDDNRTFEIYLCESSTPNFQKYYTR
LESFIFWYIDASSRIEHDEKWRFFVVFEKYKNEAGEDRYASVGYSSVYLYFCYPDKIRPR
IAQFIILPPFQRKGIGSELLMTIYKHFQAKDNVCDITVEDASEDFQRLRNINDAKLLKNL
DSFSPENLKNGFNTKMAQEAKDKFKINAKQSRIIYEILRLGITNTSNKNEYKAYRLEVKK
RLNMNYLKEKRDLNRVISRGFKITADKKLSLPSTEENIESLEGMYRETEDYY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g1505.t3 CDD cd04301 NAT_SF 162 210 0.000164
6 g1505.t3 Gene3D G3DSA:3.90.360.10 Histone Acetyltransferase; Domain 1 1 130 0.000000
5 g1505.t3 Gene3D G3DSA:3.40.630.30 - 85 229 0.000000
7 g1505.t3 Gene3D G3DSA:1.10.10.390 - 232 284 0.000000
2 g1505.t3 PANTHER PTHR12046 HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT 1 350 0.000000
3 g1505.t3 PANTHER PTHR12046:SF0 HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT 1 350 0.000000
1 g1505.t3 Pfam PF10394 Histone acetyl transferase HAT1 N-terminus 1 130 0.000000
4 g1505.t3 SUPERFAMILY SSF55729 Acyl-CoA N-acyltransferases (Nat) 1 280 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042393 histone binding MF
GO:0005634 nucleus CC
GO:0006325 chromatin organization BP
GO:0004402 histone acetyltransferase activity MF
GO:0016573 histone acetylation BP
GO:0006348 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values