Gene loci information

Transcript annotation

  • This transcript has been annotated as Acyl-CoA Delta(11) desaturase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15057 g15057.t10 TTS g15057.t10 3734473 3734473
chr_4 g15057 g15057.t10 isoform g15057.t10 3734658 3738133
chr_4 g15057 g15057.t10 exon g15057.t10.exon1 3734658 3734722
chr_4 g15057 g15057.t10 cds g15057.t10.CDS1 3734658 3734722
chr_4 g15057 g15057.t10 exon g15057.t10.exon2 3734780 3735043
chr_4 g15057 g15057.t10 cds g15057.t10.CDS2 3734780 3735043
chr_4 g15057 g15057.t10 exon g15057.t10.exon3 3735215 3735781
chr_4 g15057 g15057.t10 cds g15057.t10.CDS3 3735215 3735781
chr_4 g15057 g15057.t10 exon g15057.t10.exon4 3735871 3736009
chr_4 g15057 g15057.t10 cds g15057.t10.CDS4 3735871 3736009
chr_4 g15057 g15057.t10 exon g15057.t10.exon5 3736067 3736189
chr_4 g15057 g15057.t10 cds g15057.t10.CDS5 3736067 3736102
chr_4 g15057 g15057.t10 exon g15057.t10.exon6 3738105 3738133
chr_4 g15057 g15057.t10 TSS g15057.t10 3738227 3738227

Sequences

>g15057.t10 Gene=g15057 Length=1187
ACTAAGAGTTTTCTTTTTGCATCTTTAAGTTTTCGTTTCGTATGCAAAGAAGTTGAAAAA
CATAAAAAAAAGAATTTGCAAATCATCATATTCATCTGGTATTAAAATTAAGGAAAATGT
CATCGTTTTCATCAAATGACACACTTGGCTTGACAAAAAATGTGAACTCATTATTTCATA
TAAAACCTTTTAAAACGGAAATTGTTTGGCGCAATGTTATCATCTTTACCATCATACATT
ATTTAGCACTCAATGCATTTACTATGTGGGATTTTAGAGTTTTTGCATTTCATTACATCT
ACGGTTGGGTTGGAGCATTTGGAATTTCTGCTGGTGCACATCGTTTATGGTGTCATCGAA
GTTACAAAGCAAATAAGAAACTTGAATTGCTTCTACTTTATCTAAACACAATAGCAGTTC
AAAATTCAGTCATTGAATGGGTTCGTGATCATCGAGTTCATCACAAACATAGCGATACTG
ATGCAGATCCTCATAATTCTAAACGTGGATTTTTCTTTTCTCATATGGGCTGGTTATTAT
GCAAAAAACATCCTGATGTGAAGAAATTCGGTTCAAAAATTGATATGAGCGATTTAATGA
ATAATCCATTGCTGAGATTTCAACATAAATATTATATACCACTTATTTTGTTGATCAGTC
AAATTATTCCAATTGCTTGCACAATTTATCTTTTTAACACGACAGTCTACACTTCATTTT
GTTTTAGTATGAACAGATATTTCATGTCATTACATCGAACATGGTTTACAAACTCGTTTG
CTCATATTGGAACTTGGAAACCATATGACAAAAACATTGCATCAAGTGATTCGAAATTTT
TTGGAACAATTTGCTTTGGCTGGCATAATTTCCACCATGTCTTTCCATGGGATTACAAAG
TTTCAGAACTTCCACTCTATCGCTACAACTTCACAATCGCTTTTATTGACTTCTTTGTAT
GGCTTGGATGGGCAACAGACCTAAAAGTAGCATCTGACGATATGATCAGAAAAAGAGTTC
TCAGAACTGGTGATGGAAGTCATCCATATTCAATTGAAGCTGCTAAAAACAAAATTGAAT
TTGATATTGCGCAAAATGTGTCAAGTTTATGTTGGGGATTGGGCGACAATGATATGACTG
AAGATGAAATGAATGGAATAAAAACACTACACCCAAAAAGTCAATAA

>g15057.t10 Gene=g15057 Length=356
MSSFSSNDTLGLTKNVNSLFHIKPFKTEIVWRNVIIFTIIHYLALNAFTMWDFRVFAFHY
IYGWVGAFGISAGAHRLWCHRSYKANKKLELLLLYLNTIAVQNSVIEWVRDHRVHHKHSD
TDADPHNSKRGFFFSHMGWLLCKKHPDVKKFGSKIDMSDLMNNPLLRFQHKYYIPLILLI
SQIIPIACTIYLFNTTVYTSFCFSMNRYFMSLHRTWFTNSFAHIGTWKPYDKNIASSDSK
FFGTICFGWHNFHHVFPWDYKVSELPLYRYNFTIAFIDFFVWLGWATDLKVASDDMIRKR
VLRTGDGSHPYSIEAAKNKIEFDIAQNVSSLCWGLGDNDMTEDEMNGIKTLHPKSQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
21 g15057.t10 CDD cd03505 Delta9-FADS-like 55 290 2.49026E-55
1 g15057.t10 PANTHER PTHR11351 ACYL-COA DESATURASE 24 320 7.9E-104
2 g15057.t10 PANTHER PTHR11351:SF31 RE43130P 24 320 7.9E-104
5 g15057.t10 PRINTS PR00075 Fatty acid desaturase family 1 signature 31 51 1.0E-39
8 g15057.t10 PRINTS PR00075 Fatty acid desaturase family 1 signature 75 95 1.0E-39
3 g15057.t10 PRINTS PR00075 Fatty acid desaturase family 1 signature 112 141 1.0E-39
6 g15057.t10 PRINTS PR00075 Fatty acid desaturase family 1 signature 173 191 1.0E-39
7 g15057.t10 PRINTS PR00075 Fatty acid desaturase family 1 signature 205 226 1.0E-39
4 g15057.t10 PRINTS PR00075 Fatty acid desaturase family 1 signature 246 260 1.0E-39
14 g15057.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 28 -
18 g15057.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 29 51 -
15 g15057.t10 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 52 56 -
20 g15057.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 57 78 -
12 g15057.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 79 171 -
17 g15057.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 193 -
16 g15057.t10 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 194 266 -
19 g15057.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 267 286 -
13 g15057.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 287 356 -
9 g15057.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 51 -
11 g15057.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 56 78 -
10 g15057.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 176 198 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed