Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA Delta(11) desaturase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15057 g15057.t14 TTS g15057.t14 3734473 3734473
chr_4 g15057 g15057.t14 isoform g15057.t14 3734658 3738227
chr_4 g15057 g15057.t14 exon g15057.t14.exon1 3734658 3734722
chr_4 g15057 g15057.t14 cds g15057.t14.CDS1 3734658 3734722
chr_4 g15057 g15057.t14 exon g15057.t14.exon2 3734780 3735043
chr_4 g15057 g15057.t14 cds g15057.t14.CDS2 3734780 3735043
chr_4 g15057 g15057.t14 exon g15057.t14.exon3 3735209 3735781
chr_4 g15057 g15057.t14 cds g15057.t14.CDS3 3735209 3735548
chr_4 g15057 g15057.t14 exon g15057.t14.exon4 3738105 3738227
chr_4 g15057 g15057.t14 TSS g15057.t14 3738227 3738227

Sequences

>g15057.t14 Gene=g15057 Length=1025
AGTTTCGTTTGAGACTTTCGTGTGAAAAGACATAAAAATAATTGAAGTGAAAATTAAATT
TTTTTTTAGAAAAAGAAGAAAAAAGTTATAAAGTACTAAGAGTTTTCTTTTTGCATCTTT
AAGATTACATCTACGGTTGGGTTGGAGCATTTGGAATTTCTGCTGGTGCACATCGTTTAT
GGTGTCATCGAAGTTACAAAGCAAATAAGAAACTTGAATTGCTTCTACTTTATCTAAACA
CAATAGCAGTTCAAAATTCAGTCATTGAATGGGTTCGTGATCATCGAGTTCATCACAAAC
ATAGCGATACTGATGCAGATCCTCATAATTCTAAACGTGGATTTTTCTTTTCTCATATGG
GCTGGTTATTATGCAAAAAACATCCTGATGTGAAGAAATTCGGTTCAAAAATTGATATGA
GCGATTTAATGAATAATCCATTGCTGAGATTTCAACATAAATATTATATACCACTTATTT
TGTTGATCAGTCAAATTATTCCAATTGCTTGCACAATTTATCTTTTTAACACGACAGTCT
ACACTTCATTTTGTTTTAGTATGAACAGATATTTCATGTCATTACATCGAACATGGTTTA
CAAACTCGTTTGCTCATATTGGAACTTGGAAACCATATGACAAAAACATTGCATCAAGTG
ATTCGAAATTTTTTGGAACAATTTGCTTTGGTGAAGGCTGGCATAATTTCCACCATGTCT
TTCCATGGGATTACAAAGTTTCAGAACTTCCACTCTATCGCTACAACTTCACAATCGCTT
TTATTGACTTCTTTGTATGGCTTGGATGGGCAACAGACCTAAAAGTAGCATCTGACGATA
TGATCAGAAAAAGAGTTCTCAGAACTGGTGATGGAAGTCATCCATATTCAATTGAAGCTG
CTAAAAACAAAATTGAATTTGATATTGCGCAAAATGTGTCAAGTTTATGTTGGGGATTGG
GCGACAATGATATGACTGAAGATGAAATGAATGGAATAAAAACACTACACCCAAAAAGTC
AATAA

>g15057.t14 Gene=g15057 Length=222
MGWLLCKKHPDVKKFGSKIDMSDLMNNPLLRFQHKYYIPLILLISQIIPIACTIYLFNTT
VYTSFCFSMNRYFMSLHRTWFTNSFAHIGTWKPYDKNIASSDSKFFGTICFGEGWHNFHH
VFPWDYKVSELPLYRYNFTIAFIDFFVWLGWATDLKVASDDMIRKRVLRTGDGSHPYSIE
AAKNKIEFDIAQNVSSLCWGLGDNDMTEDEMNGIKTLHPKSQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g15057.t14 PANTHER PTHR11351 ACYL-COA DESATURASE 1 191 1.2E-59
2 g15057.t14 PANTHER PTHR11351:SF91 DESATURASE 1, ISOFORM A-RELATED 1 191 1.2E-59
5 g15057.t14 PRINTS PR00075 Fatty acid desaturase family 1 signature 37 55 4.5E-13
4 g15057.t14 PRINTS PR00075 Fatty acid desaturase family 1 signature 69 90 4.5E-13
3 g15057.t14 PRINTS PR00075 Fatty acid desaturase family 1 signature 112 126 4.5E-13
8 g15057.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 35 -
11 g15057.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 36 57 -
9 g15057.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 58 132 -
10 g15057.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 133 152 -
7 g15057.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 153 222 -
6 g15057.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 36 58 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed