Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Delta(9)-fatty-acid desaturase fat-6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15057 g15057.t5 TTS g15057.t5 3734473 3734473
chr_4 g15057 g15057.t5 isoform g15057.t5 3734658 3735994
chr_4 g15057 g15057.t5 exon g15057.t5.exon1 3734658 3734722
chr_4 g15057 g15057.t5 exon g15057.t5.exon2 3734780 3735043
chr_4 g15057 g15057.t5 cds g15057.t5.CDS1 3735034 3735043
chr_4 g15057 g15057.t5 exon g15057.t5.exon3 3735541 3735781
chr_4 g15057 g15057.t5 cds g15057.t5.CDS2 3735541 3735781
chr_4 g15057 g15057.t5 exon g15057.t5.exon4 3735871 3735994
chr_4 g15057 g15057.t5 cds g15057.t5.CDS3 3735871 3735898
chr_4 g15057 g15057.t5 TSS g15057.t5 NA NA

Sequences

>g15057.t5 Gene=g15057 Length=694
TCATTATTTCATATAAAACCTTTTAAAACGGAAATTGTTTGGCGCAATGTTATCATCTTT
ACCATCATACATTATTTAGCACTCAATGCATTTACTATGTGGGATTTTAGAGTTTTTGCA
TTTCATTACATCTACGGTTGGGTTGGAGCATTTGGAATTTCTGCTGGTGCACATCGTTTA
TGGTGTCATCGAAGTTACAAAGCAAATAAGAAACTTGAATTGCTTCTACTTTATCTAAAC
ACAATAGCAGTTCAAAATTCAGTCATTGAATGGGTTCGTGATCATCGAGTTCATCACAAA
CATAGCGATACTGATGCAGATCCTCATAATTCTAAACGTGGATTTTTCTTTTCTCATATG
GGCTGGCTGGCATAATTTCCACCATGTCTTTCCATGGGATTACAAAGTTTCAGAACTTCC
ACTCTATCGCTACAACTTCACAATCGCTTTTATTGACTTCTTTGTATGGCTTGGATGGGC
AACAGACCTAAAAGTAGCATCTGACGATATGATCAGAAAAAGAGTTCTCAGAACTGGTGA
TGGAAGTCATCCATATTCAATTGAAGCTGCTAAAAACAAAATTGAATTTGATATTGCGCA
AAATGTGTCAAGTTTATGTTGGGGATTGGGCGACAATGATATGACTGAAGATGAAATGAA
TGGAATAAAAACACTACACCCAAAAAGTCAATAA

>g15057.t5 Gene=g15057 Length=92
MWDFRVFAFHYIYGWVGAFGISAGAHRLWCHRSYKANKKLELLLLYLNTIAVQNSVIEWV
RDHRVHHKHSDTDADPHNSKRGFFFSHMGWLA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g15057.t5 PANTHER PTHR11351 ACYL-COA DESATURASE 5 91 7.0E-39
2 g15057.t5 PANTHER PTHR11351:SF31 RE43130P 5 91 7.0E-39
5 g15057.t5 PRINTS PR00075 Fatty acid desaturase family 1 signature 3 25 6.0E-25
4 g15057.t5 PRINTS PR00075 Fatty acid desaturase family 1 signature 26 46 6.0E-25
3 g15057.t5 PRINTS PR00075 Fatty acid desaturase family 1 signature 63 92 6.0E-25
8 g15057.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
9 g15057.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 30 -
7 g15057.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 31 92 -
6 g15057.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 29 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

## Warning: Removed 1 row(s) containing missing values (geom_path).

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed