Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15081 g15081.t4 isoform g15081.t4 3820425 3821594
chr_4 g15081 g15081.t4 exon g15081.t4.exon1 3820425 3820846
chr_4 g15081 g15081.t4 cds g15081.t4.CDS1 3820634 3820726
chr_4 g15081 g15081.t4 exon g15081.t4.exon2 3820914 3820962
chr_4 g15081 g15081.t4 exon g15081.t4.exon3 3821022 3821083
chr_4 g15081 g15081.t4 exon g15081.t4.exon4 3821222 3821368
chr_4 g15081 g15081.t4 exon g15081.t4.exon5 3821443 3821594
chr_4 g15081 g15081.t4 TTS g15081.t4 3821629 3821629
chr_4 g15081 g15081.t4 TSS g15081.t4 NA NA

Sequences

>g15081.t4 Gene=g15081 Length=832
ATGAAAAGTTTAATTTTTTTATTTTTGCTAGCTTTGGGTTTGTTATACATAAAATTATTT
TAAACAATTTATTTCAATTTTTAAAAGTTGCAGGCTGCAGAACTCAAAGAGCTAAAAATT
GCCCAGTATGCACAGCACCAAAAATTCTTGATGAAAAAACCTGTAAATGTAACTGTGCTC
CATTGCCAAATTGTGAAAAACCAAAATTTATGCAAAACTTAGGAACATGCCTATGTAAGT
TATTAAAAAATTTTCATTCAAAAAAAATTTTCTTTTATAAAAACTTCAAGGTGAATGTGT
AAATAAAAATAGAAACTGCCCTGCAAATAAACAATATGATGATTTCGAATGTGGATGTGC
ATGCAAAGACACTTGTCATGTGTGTGCAAAACCTCAAATATGGAATGAAAAATTATGTAT
TTGTGATTGTGAAAAAAATTTGAGCCATACTTGTACAAGAAATCAATATTGGGATTTTGC
TTCTTGTGAATGCAAGTGTAAACATCAACAAACAAAATGTTGTGCTCCAAAAGAATGGGA
TAATAAATTGTGTGAATGTAAATGTCCTAATCACCCAAAATGTGAACCAGGTTTTAAATG
GAACCCTGATAATTGCCAATGCATATGTATTAGAAAGCCAATGAAATGTAATGCACCTCA
TGTTTGGCTTGAGAGTAAATGTAAATGTGATTGTCCAGAAATAAATTGTGGAACAGATAG
CAAAATTGATCCAAAAACATGTAAATGCGTTGCTGTTCCAACAAAACCTACCACGACCAC
TAAAGCTACAACAACTACTACACTTAAGAAAAAAGAACCTAAGAAAGCATGA

>g15081.t4 Gene=g15081 Length=30
MQNLGTCLCKLLKNFHSKKIFFYKNFKVNV

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed