Gene loci information

Transcript annotation

  • This transcript has been annotated as Ethanolamine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15082 g15082.t1 isoform g15082.t1 3838957 3840335
chr_4 g15082 g15082.t1 exon g15082.t1.exon1 3838957 3839443
chr_4 g15082 g15082.t1 cds g15082.t1.CDS1 3838957 3839443
chr_4 g15082 g15082.t1 exon g15082.t1.exon2 3839499 3839899
chr_4 g15082 g15082.t1 cds g15082.t1.CDS2 3839499 3839899
chr_4 g15082 g15082.t1 exon g15082.t1.exon3 3840228 3840335
chr_4 g15082 g15082.t1 cds g15082.t1.CDS3 3840228 3840335
chr_4 g15082 g15082.t1 TSS g15082.t1 3840388 3840388
chr_4 g15082 g15082.t1 TTS g15082.t1 NA NA

Sequences

>g15082.t1 Gene=g15082 Length=996
ATGAAAAGTTTTAATATTTTTATTGATGAGAATAATTTTGAAGAAAATATTTTGAAAATT
TTGAAGGAAATCCGATCAGAATGGGAAACTAAAGAAATTAAATTCAAAATTTTCTCTGAA
GGTAAAACAAACAAATTAATTGGAACATATTGTCTTAGCATTTCTGAGATGATTCTCTTT
AGAATCAATGGAAATAAAACAGAATCAATAATTGATCGTGATGCTGAAATTAAAAATATG
ATTTTTCTCAACAAATTTGGTTTTGCGCCTAAAATTTATGCAAAATTTTCAAATGGACTT
TGTTATGAATTTACTCCTGGAATTGTTGTTACAACAGAAATGATTTATGAATCAAATATA
TTTAAATTGATCGCTAGAAAGATGGCTAAAATGCATAAAATTGAGTTGACTGAAGAGCAG
AAGAAAAATGAGCCGATGATTATAAGTAAAACTTTGGAATATCTTGAAACAATTCCTGAA
AGATTCAGTGATGATAAAAAAGATTTCAAATCACGTCAACTTCTACCATCAAAACAATCA
TTATTGACAGAATTTCTTTATCTACAATCAGTTCTCAAAAGTTGTCATTCTCCAATAGTT
TTCTGCCATAATGACCTCAATATGGTGAATATAATTTACACTGCCGATATTGAAAAAATA
ACTTTCATTGATTTTGAATATGCTGAACCAAATTATCAAGCTTTTGATATTGCAAATCAT
TTTGCAAAAATCGCTGGATGTTGTGATGATTCTGGAATCGATTATGGAAAATTTCCTTCA
AAAGAATTTCAAAAAAGATGGTTGAAACACTATTTGAGAGAATTTCATGATCGACGTGAA
ATTAAAAATTATGAAATTGAAAATTTACAAATAATTGTAAGCAAATTTGTACTTTCAAGT
CATTTTTTGTGGACATGCTGGTGTTTGATACAAGCTGAATATTCAACAATTGAATTTGAT
TTTATTAAGTATGTATGGTTGGTAAATGACAGATAA

>g15082.t1 Gene=g15082 Length=331
MKSFNIFIDENNFEENILKILKEIRSEWETKEIKFKIFSEGKTNKLIGTYCLSISEMILF
RINGNKTESIIDRDAEIKNMIFLNKFGFAPKIYAKFSNGLCYEFTPGIVVTTEMIYESNI
FKLIARKMAKMHKIELTEEQKKNEPMIISKTLEYLETIPERFSDDKKDFKSRQLLPSKQS
LLTEFLYLQSVLKSCHSPIVFCHNDLNMVNIIYTADIEKITFIDFEYAEPNYQAFDIANH
FAKIAGCCDDSGIDYGKFPSKEFQKRWLKHYLREFHDRREIKNYEIENLQIIVSKFVLSS
HFLWTCWCLIQAEYSTIEFDFIKYVWLVNDR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g15082.t1 CDD cd05157 ETNK_euk 33 324 0
5 g15082.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 54 104 0
6 g15082.t1 Gene3D G3DSA:3.90.1200.10 - 64 324 0
2 g15082.t1 PANTHER PTHR22603 CHOLINE/ETHANOALAMINE KINASE 5 327 0
3 g15082.t1 PANTHER PTHR22603:SF87 ETHANOLAMINE KINASE 1 5 327 0
1 g15082.t1 Pfam PF01633 Choline/ethanolamine kinase 56 247 0
4 g15082.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 7 325 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed