Gene loci information

Transcript annotation

  • This transcript has been annotated as Ethanolamine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15082 g15082.t2 isoform g15082.t2 3838957 3840335
chr_4 g15082 g15082.t2 exon g15082.t2.exon1 3838957 3839443
chr_4 g15082 g15082.t2 cds g15082.t2.CDS1 3838957 3839443
chr_4 g15082 g15082.t2 exon g15082.t2.exon2 3839499 3840335
chr_4 g15082 g15082.t2 cds g15082.t2.CDS2 3839499 3839839
chr_4 g15082 g15082.t2 TSS g15082.t2 3840388 3840388
chr_4 g15082 g15082.t2 TTS g15082.t2 NA NA

Sequences

>g15082.t2 Gene=g15082 Length=1324
ATGAAAAGTTTTAATATTTTTATTGATGAGAATAATTTTGAAGAAAATATTTTGAAAATT
TTGAAGGAAATCCGATCAGAATGGGAAACTAAAGAAATTAAATTCAAAGTAAGAATATCA
AGATTTTTTTTTGTTCATACTATCACCAAATATTCAATTTTTTGAAAGAATTAGAATTTT
TTTTATTGTTTTTTAAATCTTCAATTACCATTTATTCTACTGGAACACAGAAAATAAATA
AATAAATGAATTTACTCTAGCAAGTGAAGTAATAAAAACTAAAGTTTATATTTCAACTTA
ACTTGTAAACAAAAATAATTTAAATATCTGAATGACAGATATTGTTGACAACAGATAAAA
AATTTTCAAGCTTTTTCTAAATGTTTTATGATCATAATTAAAACATTATTTGTTAATATA
AAAATTTATTTCTTAGATTTTCTCTGAAGGTAAAACAAACAAATTAATTGGAACATATTG
TCTTAGCATTTCTGAGATGATTCTCTTTAGAATCAATGGAAATAAAACAGAATCAATAAT
TGATCGTGATGCTGAAATTAAAAATATGATTTTTCTCAACAAATTTGGTTTTGCGCCTAA
AATTTATGCAAAATTTTCAAATGGACTTTGTTATGAATTTACTCCTGGAATTGTTGTTAC
AACAGAAATGATTTATGAATCAAATATATTTAAATTGATCGCTAGAAAGATGGCTAAAAT
GCATAAAATTGAGTTGACTGAAGAGCAGAAGAAAAATGAGCCGATGATTATAAGTAAAAC
TTTGGAATATCTTGAAACAATTCCTGAAAGATTCAGTGATGATAAAAAAGATTTCAAATC
ACGTCAACTTCTACCATCAAAACAATCATTATTGACAGAATTTCTTTATCTACAATCAGT
TCTCAAAAGTTGTCATTCTCCAATAGTTTTCTGCCATAATGACCTCAATATGGTGAATAT
AATTTACACTGCCGATATTGAAAAAATAACTTTCATTGATTTTGAATATGCTGAACCAAA
TTATCAAGCTTTTGATATTGCAAATCATTTTGCAAAAATCGCTGGATGTTGTGATGATTC
TGGAATCGATTATGGAAAATTTCCTTCAAAAGAATTTCAAAAAAGATGGTTGAAACACTA
TTTGAGAGAATTTCATGATCGACGTGAAATTAAAAATTATGAAATTGAAAATTTACAAAT
AATTGTAAGCAAATTTGTACTTTCAAGTCATTTTTTGTGGACATGCTGGTGTTTGATACA
AGCTGAATATTCAACAATTGAATTTGATTTTATTAAGTATGTATGGTTGGTAAATGACAG
ATAA

>g15082.t2 Gene=g15082 Length=275
MILFRINGNKTESIIDRDAEIKNMIFLNKFGFAPKIYAKFSNGLCYEFTPGIVVTTEMIY
ESNIFKLIARKMAKMHKIELTEEQKKNEPMIISKTLEYLETIPERFSDDKKDFKSRQLLP
SKQSLLTEFLYLQSVLKSCHSPIVFCHNDLNMVNIIYTADIEKITFIDFEYAEPNYQAFD
IANHFAKIAGCCDDSGIDYGKFPSKEFQKRWLKHYLREFHDRREIKNYEIENLQIIVSKF
VLSSHFLWTCWCLIQAEYSTIEFDFIKYVWLVNDR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g15082.t2 CDD cd05157 ETNK_euk 2 268 0
5 g15082.t2 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 2 48 0
6 g15082.t2 Gene3D G3DSA:3.90.1200.10 - 8 268 0
2 g15082.t2 PANTHER PTHR22603 CHOLINE/ETHANOALAMINE KINASE 2 269 0
3 g15082.t2 PANTHER PTHR22603:SF76 ETHANOLAMINE KINASE 2 2 269 0
1 g15082.t2 Pfam PF01633 Choline/ethanolamine kinase 2 192 0
4 g15082.t2 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 3 269 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed