General information for g15084.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ethanolamine kinase.
Parent gene
- The parent gene g15084 is located on chr_4: 3850531..3851611 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15084 | g15084.t2 | isoform | g15084.t2 | 3849801 | 3851611 |
| chr_4 | g15084 | g15084.t2 | exon | g15084.t2.exon1 | 3849801 | 3850074 |
| chr_4 | g15084 | g15084.t2 | exon | g15084.t2.exon2 | 3850224 | 3850681 |
| chr_4 | g15084 | g15084.t2 | cds | g15084.t2.CDS1 | 3850531 | 3850681 |
| chr_4 | g15084 | g15084.t2 | exon | g15084.t2.exon3 | 3850736 | 3851137 |
| chr_4 | g15084 | g15084.t2 | cds | g15084.t2.CDS2 | 3850736 | 3850953 |
| chr_4 | g15084 | g15084.t2 | exon | g15084.t2.exon4 | 3851460 | 3851611 |
| chr_4 | g15084 | g15084.t2 | TSS | g15084.t2 | NA | NA |
| chr_4 | g15084 | g15084.t2 | TTS | g15084.t2 | NA | NA |
Sequences
>g15084.t2 Gene=g15084 Length=1286
TTGATCTTCATATTAAGTGCTAGCAGATAATCTTAGTAAAAAAAGATGAAAAGTTTTAAT
ATTTTATTGATGAGAATAATTTTGAAGAAAATATTTTGAAAATTTTGAAGGAAATCCGAT
CAGAATGGGAAACTAAAGAAATTAAATTCAAAATTTTCTCTGAAGGTAAAACAAACAAAT
TAATTGGAACATATTGTCTTAGCATTTCTGAGATGATTCTCTTAAGAATCAATGGAAATA
AAACAGAATCAATAATTGATCGTGATGCTGAAATTAAAAATATAGTTTTTCTCAACAAAT
TTGGTTTTGCGCCTAAAATTTATGCAAAATTTTCAAATGGACTTTGTTATGAATTTCACT
CCTGGAATTGTCGTTACAACAGAAATGATTTATGAATCAAATATATTTAAATTAATTGCA
AGAAAAATGGCTAAAATGCACAAAATTGAGTTGACTGAAGAGCAGAAGAAAAATGAGCCG
ATGATTATAAGTAAAACTTTGGAATATCTTGAAACAATTCCTGAAAGATTCAGTGATGAT
AAAAAGGATTTCAAAGTACGTCAGCTTTTACCATCAAAACAATCATTATTGACAGAATTT
CTTTTTCTACAATCAGTTCTCAAAAGTTTGCATTCTCCAATAGTTTTCTGCCATAATGAC
CTCAATATGGTGAATATTATTTACACTGCCGATATTGAAAAATAACTTTCATTGATTTTG
AATATGCTGAACCAAATTATCAAGCTTTTGATATTGCAAATCATTTTGCAAAAATCGCTG
GATGTTGTGATGATTCTGGAATCGATTATGGAAAATTTCCTTCAAAAGAATTTCAAAAAA
GATGGTTGAAACACTATTTGAGAGAATTTCATGATCGACGTGAAATTAAAAATTATGAAA
TTGAAAATTTACAAATAATTGTAAGCAAATTTGTACTTTCAAGTCATTTTTTGTGGACAT
GCTGGTGTTTGATACAAGCTGAATATTCAACAATTGAATTTGATTTTATTAAAATGGCAT
CAATTTACTATGAAGAATATTTGAACAGAAAAAGACAATTTTTTTAAAGAAATCCTTTTC
GAAAAAATTTGAATTTCGTTAATATATAAGTATTAGAACATTATGGAAAATATATTTAAA
GTTTTAGTCAGGAATCACTGATAGCTACACATATACAGTACATAAGTTTATTATTATTAT
CATTATTATTCTTTGTTATTCTAAACTGACTTCAGCTAATAAAAACTTATTTTATTCAAT
AAATCAGTTTTTAACCCAAAAATAAA
>g15084.t2 Gene=g15084 Length=122
MDFVMNFTPGIVVTTEMIYESNIFKLIARKMAKMHKIELTEEQKKNEPMIISKTLEYLET
IPERFSDDKKDFKVRQLLPSKQSLLTEFLFLQSVLKSLHSPIVFCHNDLNMVNIIYTADI
EK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15084.t2 | Gene3D | G3DSA:3.90.1200.10 | - | 2 | 122 | 0 |
| 2 | g15084.t2 | PANTHER | PTHR22603 | CHOLINE/ETHANOALAMINE KINASE | 4 | 118 | 0 |
| 3 | g15084.t2 | PANTHER | PTHR22603:SF76 | ETHANOLAMINE KINASE 2 | 4 | 118 | 0 |
| 1 | g15084.t2 | Pfam | PF01633 | Choline/ethanolamine kinase | 5 | 117 | 0 |
| 4 | g15084.t2 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 116 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed